View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_56 (Length: 272)

Name: NF4513_low_56
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_56
NF4513_low_56
[»] chr7 (7 HSPs)
chr7 (10-272)||(20934218-20934480)
chr7 (109-272)||(20933288-20933449)
chr7 (109-257)||(30676395-30676544)
chr7 (109-257)||(30676618-30676768)
chr7 (129-263)||(26130593-26130725)
chr7 (208-263)||(18031943-18031998)
chr7 (77-107)||(20933241-20933271)
[»] chr5 (1 HSPs)
chr5 (77-263)||(33123028-33123221)
[»] chr2 (6 HSPs)
chr2 (77-263)||(33523838-33524031)
chr2 (109-264)||(21212434-21212590)
chr2 (109-265)||(21000942-21001097)
chr2 (156-264)||(23055701-23055809)
chr2 (156-254)||(23055303-23055401)
chr2 (167-225)||(49417-49476)
[»] scaffold0071 (1 HSPs)
scaffold0071 (109-264)||(58130-58286)
[»] chr1 (2 HSPs)
chr1 (109-263)||(19492197-19492352)
chr1 (178-263)||(17981570-17981654)
[»] chr4 (6 HSPs)
chr4 (109-264)||(22517393-22517549)
chr4 (109-199)||(32632358-32632449)
chr4 (177-264)||(23500215-23500300)
chr4 (112-232)||(56126200-56126319)
chr4 (207-268)||(32632471-32632532)
chr4 (156-232)||(37270371-37270447)
[»] chr8 (5 HSPs)
chr8 (77-253)||(16979258-16979440)
chr8 (77-164)||(22681265-22681361)
chr8 (109-176)||(22751709-22751776)
chr8 (132-262)||(31233673-31233805)
chr8 (222-264)||(44333623-44333665)
[»] chr6 (4 HSPs)
chr6 (129-263)||(17304933-17305067)
chr6 (77-192)||(17306177-17306297)
chr6 (80-258)||(19139322-19139501)
chr6 (144-263)||(17304624-17304743)
[»] scaffold0003 (2 HSPs)
scaffold0003 (77-213)||(242929-243073)
scaffold0003 (154-223)||(247323-247393)
[»] chr3 (1 HSPs)
chr3 (109-240)||(48294720-48294852)
[»] scaffold0025 (1 HSPs)
scaffold0025 (111-164)||(26403-26455)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 20934218 - 20934480
Alignment:
Q  10 gacatcatcattgcaaccctaccggtgtccgacatttctagctcaggggtgatcgtcttcggtgaataatagtagaagagagattctctaactactccca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20934218 gacatcatcattgcaaccctaccggtgtccgacatttctagctcaggggtgatcgtcttcggtgaataatagtagaagagagattctctaactactccca 20934317  T
Q  110 gctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactctaaactcctaagaattcgcctttatttacagata 209  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20934318 gctccgacacaactcagataggaatcctaccatagccctaaatagaaaacttattctgtcatactctaaactcctaagaattcgcctttatttacagata 20934417  T
Q  210 aatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcactt 272  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20934418 aatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcactt 20934480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 109 - 272
Target Start/End: Original strand, 20933288 - 20933449
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactctaaactcctaagaattcgcctttatttacagat 208  Q
    ||||| ||||||||||||| |||||||||||| ||||||| || |||||||| | || |||||||||||||||| |||||| ||  ||||||||||| ||    
T  20933288 agctctgacacaactcagagaggaatcctactctagccctgaacagaaaactcaatctgtcatactctaaactcataagaactc--ctttatttacaaat 20933385  T
Q  209 aaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtcactt 272  Q
    ||| ||||||||||||| | |||| |||||||  ||||||||||||||||||||| ||||||||    
T  20933386 aaagagaacattctagtatataaccctaatgggcctcttattatttaatcctaataagtcactt 20933449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 109 - 257
Target Start/End: Complemental strand, 30676544 - 30676395
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactct-aaactcctaagaattcgcctttatttacaga 207  Q
    ||||||||| ||||||||| |||||||||||| | |||||||| ||||||||||||||||| |||||| |||||| ||||||||| ||||||  |||| |    
T  30676544 agctccgactcaactcagagaggaatcctactctggccctaaacagaaaacttattccgtcctactctaaaactcttaagaattcccctttacatacaaa 30676445  T
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaat 257  Q
    |||| |||||||||| || |||||| |||||||  |||||||||||||||    
T  30676444 taaagagaacattcttgtatttaaccctaatgggcctcttattatttaat 30676395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 109 - 257
Target Start/End: Original strand, 30676618 - 30676768
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactct-aaactcct-aagaattcgcctttatttacag 206  Q
    ||||||||| ||||||||| |||||||||||| | |||||||| |||||||||||||| || |||||| |||||| | |||||||| ||||||  ||||     
T  30676618 agctccgactcaactcagagaggaatcctactctggccctaaacagaaaacttattccatcctactctaaaactcttaaagaattcccctttacatacaa 30676717  T
Q  207 ataaatagaacattctagtgtttaactctaatggaactcttattatttaat 257  Q
    ||||| ||||||||||||| |||||| |||||||  |||||||||||||||    
T  30676718 ataaagagaacattctagtatttaaccctaatgggcctcttattatttaat 30676768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 129 - 263
Target Start/End: Original strand, 26130593 - 26130725
Alignment:
Q  129 aggaatcctactatagccctaaatagaaaacttattccgtcatactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtt 228  Q
    |||||||||||| | |||||||| |  ||||| | ||||||||||||||||||||||| |||||  |||||| |||| ||||| ||||||||||| | ||    
T  26130593 aggaatcctactctggccctaaaca--aaactcaatccgtcatactctaaactcctaaaaattccactttatatacaaataaagagaacattctaatatt 26130690  T
Q  229 taactctaatggaactcttattatttaatcctaat 263  Q
    ||||||||||||  ||||||||||| |||||||||    
T  26130691 taactctaatgggcctcttattattaaatcctaat 26130725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 263
Target Start/End: Original strand, 18031943 - 18031998
Alignment:
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 263  Q
    |||| ||||||||||||| ||||||  ||||||  |||||||||||||||||||||    
T  18031943 taaagagaacattctagtatttaaccttaatgggcctcttattatttaatcctaat 18031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 107
Target Start/End: Original strand, 20933241 - 20933271
Alignment:
Q  77 aatagtagaagagagattctctaactactcc 107  Q
    |||||||||||||||||||||||||||||||    
T  20933241 aatagtagaagagagattctctaactactcc 20933271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 77 - 263
Target Start/End: Complemental strand, 33123221 - 33123028
Alignment:
Q  77 aatagtagaagagagattctctaactactcccag-------ctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtc 169  Q
    ||||||||||||||||||||||||||||||||||       ||||||||| ||||||| |||||||||||| | ||||| || |||||||| | || |||    
T  33123221 aatagtagaagagagattctctaactactcccagagcaaagctccgacactactcagagaggaatcctactctggccctgaacagaaaactcaatctgtc 33123122  T
Q  170 atactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 263  Q
    ||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||| ||||||||||||||  ||||||||||| |||||||||    
T  33123121 atactctaaactcctaagaattcccctttatatacaaataaagagaacattctagtatttaactctaatgggcctcttattattaaatcctaat 33123028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 77 - 263
Target Start/End: Original strand, 33523838 - 33524031
Alignment:
Q  77 aatagtagaagagagattctctaactactcccag-------ctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtc 169  Q
    ||||||||||||||||||||||||||||||| ||       |||||| | |||||||| |||||||||||| | |||||||| | |||||| | || |||    
T  33523838 aatagtagaagagagattctctaactactcctagagcaaaactccgaaataactcagagaggaatcctactctggccctaaacaaaaaactcaatctgtc 33523937  T
Q  170 atactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 263  Q
    ||||||||||||||||||||||| ||||||| |||| ||||| ||||||||||||| ||||||||||||||  ||||||||||| |||||||||    
T  33523938 atactctaaactcctaagaattcccctttatatacaaataaagagaacattctagtatttaactctaatgggcctcttattattaaatcctaat 33524031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 21212434 - 21212590
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactct-aaactcctaagaattcgcctttatttacaga 207  Q
    |||||||| |||||| ||| |||||||||||| | |||||||| |||||||||||||||||||||||| |||||| | ||||  | ||||||| |||| |    
T  21212434 agctccgatacaacttagagaggaatcctactctggccctaaacagaaaacttattccgtcatactctaaaactcatgagaacgcccctttatatacaaa 21212533  T
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatg 264  Q
    |||| | ||||||||||| | |||| |||||||| || ||||| |||||||||||||    
T  21212534 taaagataacattctagtatataaccctaatggatcttttattgtttaatcctaatg 21212590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 109 - 265
Target Start/End: Complemental strand, 21001097 - 21000942
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactct-aaactcctaagaattcgcctttatttacaga 207  Q
    ||||||||||||||||||| |||||||||||| | |||||||  ||||||||||||| ||||| |||| |||||||||||||||| ||||||  ||||||    
T  21001097 agctccgacacaactcagagaggaatcctactctggccctaac-agaaaacttattctgtcat-ctcttaaactcctaagaattcccctttacatacaga 21001000  T
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatga 265  Q
    || | ||||||||||| | |||||| |||| ||  || |||||||||| |||||||||    
T  21000999 tagagagaacattctattatttaaccctaacgggccttttattatttagtcctaatga 21000942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 23055701 - 23055809
Alignment:
Q  156 aaacttattccgtcatactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattattta 255  Q
    ||||||||||| ||||||||   |||| ||||||||| ||||||  |||| ||||| |||| |||||| |||||||| |||||||  ||||||||| |||    
T  23055701 aaacttattccatcatactcatcactcgtaagaattctcctttagatacaaataaagagaagattctattgtttaaccctaatgggcctcttattaatta 23055800  T
Q  256 atcctaatg 264  Q
    | |||||||    
T  23055801 accctaatg 23055809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 23055401 - 23055303
Alignment:
Q  156 aaacttattccgtcatactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattattt 254  Q
    ||||||||||| ||||||||   |||| ||||||||| ||||||  |||| ||||| ||||||||||| | |||||| |||| ||  ||||||||||||    
T  23055401 aaacttattccatcatactcatcactcgtaagaattctcctttacatacaaataaagagaacattctattatttaaccctaacggccctcttattattt 23055303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 49476 - 49417
Alignment:
Q  167 gtcatactcta-aactcctaagaattcgcctttatttacagataaatagaacattctagt 225  Q
    ||||||||||| |||||| |||||||| ||||||| |||| ||||| |||||||||||||    
T  49476 gtcatactctagaactccaaagaattcccctttatatacaaataaagagaacattctagt 49417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 109 - 264
Target Start/End: Complemental strand, 58286 - 58130
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactctaaa-ctcctaagaattcgcctttatttacaga 207  Q
    |||||||||| |||||||| |||||||||||||| || ||||| |||||| ||| || ||||||||||| | |||| |||||||| ||||||| |||| |    
T  58286 agctccgacataactcagagaggaatcctactatggcgctaaacagaaaatttagtctgtcatactctagatctcccaagaattcccctttatatacaaa 58187  T
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatg 264  Q
    |||| |||||| |||||| | |||||||||||   ||||||||||||||||||||||    
T  58186 taaagagaacaatctagtatgtaactctaatgtgcctcttattatttaatcctaatg 58130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 109 - 263
Target Start/End: Complemental strand, 19492352 - 19492197
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactct-aaactcctaagaattcgcctttatttacaga 207  Q
    ||||||||||||||||||| |||||||||||| |||||||||| ||||||||| ||||||  || ||| |||||||| ||||||| ||||||   ||| |    
T  19492352 agctccgacacaactcagagaggaatcctactctagccctaaacagaaaacttgttccgttgtattctaaaactcctgagaattcccctttaaaaacaaa 19492253  T
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 263  Q
    |||| ||||||||||||| ||| || ||| |||  |||||||||||||||||||||    
T  19492252 taaagagaacattctagtattttaccctattgggcctcttattatttaatcctaat 19492197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 263
Target Start/End: Original strand, 17981570 - 17981654
Alignment:
Q  178 aactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaat 263  Q
    ||||| |||||| || ||||||| |||| ||||| ||||| || |||| | |||| |||||||  |||||||||||||||||||||    
T  17981570 aactcataagaactcccctttatatacaaataaagagaactttatagtatataac-ctaatgggcctcttattatttaatcctaat 17981654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 22517393 - 22517549
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactctaaa-ctcctaagaattcgcctttatttacaga 207  Q
    ||||||||||||||||||| |||||||||||| | ||||||||  |||||| || || ||||||||| ||| ||| |||||| || ||||||| |||| |    
T  22517393 agctccgacacaactcagagaggaatcctactctggccctaaaccgaaaacctaatctgtcatactccaaaactcataagaactcccctttatatacaaa 22517492  T
Q  208 taaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatg 264  Q
    |||| ||||||||||||| | |||| |||||||  ||||||| ||||||||||||||    
T  22517493 taaagagaacattctagtatataaccctaatgggcctcttatcatttaatcctaatg 22517549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 32632358 - 32632449
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactcta-aactcctaagaattcgccttta 199  Q
    ||||||||||||||||||| |||||||||||| | |||||||| ||||||  ||||||||| ||||||| |||||||||| |||| ||||||    
T  32632358 agctccgacacaactcagagaggaatcctactctggccctaaacagaaaatctattccgtcctactctagaactcctaaggattctccttta 32632449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 23500215 - 23500300
Alignment:
Q  177 aaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatg 264  Q
    ||||||| |||||||| ||||||| | || ||||| |||||||| | ||  |||||||||||||  ||||||||||||||||||||||    
T  23500215 aaactcccaagaattcccctttatattcaaataaagagaacattatggt--ttaactctaatgggcctcttattatttaatcctaatg 23500300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 56126200 - 56126319
Alignment:
Q  112 tccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactctaaa-ctcctaagaattcgcctttatttacagataa 210  Q
    |||||||||||||||  |||||||||||| |||||||||| ||||  |||||||||| || ||||||| ||   | |||||| ||||||  |||| ||||    
T  56126200 tccgacacaactcagtgaggaatcctactttagccctaaacagaa--cttattccgttatgctctaaaacttagacgaattcccctttaaatacaaataa 56126297  T
Q  211 atagaacattctagtgtttaac 232  Q
    | ||||||||||| | ||||||    
T  56126298 agagaacattctattatttaac 56126319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 268
Target Start/End: Original strand, 32632471 - 32632532
Alignment:
Q  207 ataaatagaacattctagtgtttaactctaatggaactcttattatttaatcctaatgagtc 268  Q
    ||||| ||||||||||||| |||||| |||||||  ||||  |||||||||| |||||||||    
T  32632471 ataaagagaacattctagtatttaaccctaatgggcctctagttatttaatcataatgagtc 32632532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 232
Target Start/End: Original strand, 37270371 - 37270447
Alignment:
Q  156 aaacttattccgtcatactcta-aactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaac 232  Q
    |||||||||||||||||| ||| ||||| ||||||||  ||||||| |||| ||||| ||||||||||| | ||||||    
T  37270371 aaacttattccgtcatac-ctacaactcataagaatttccctttatatacaaataaagagaacattctattatttaac 37270447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 253
Target Start/End: Complemental strand, 16979440 - 16979258
Alignment:
Q  77 aatagtagaagagaga-ttctctaactactcccag-------ctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgt 168  Q
    |||||||||||||||| ||||||||||||||||||       |||||||| ||||||||  ||||||||||| | |||||||| ||||||| ||||||||    
T  16979440 aatagtagaagagagagttctctaactactcccagagcaaagctccgacataactcaga--ggaatcctactctggccctaaacagaaaacctattccgt 16979343  T
Q  169 catactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatt 253  Q
    | || ||| |||||| ||||||||  |||||| |||| ||||| ||||||||||||| |||||| ||||||   |||||||||||    
T  16979342 cctattctgaactccaaagaattcctctttatatacaaataaagagaacattctagtatttaaccctaatgagtctcttattatt 16979258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 164
Target Start/End: Complemental strand, 22681361 - 22681265
Alignment:
Q  77 aatagtagaagagaga--ttctctaactactcccag-------ctccgacacaactcagataggaatcctactatagccctaaatagaaaacttatt 164  Q
    ||||||||||||||||  ||||||||||||||||||       ||||||||||||||||| |||||||||||| | |||||||| ||||||||||||    
T  22681361 aatagtagaagagagagtttctctaactactcccagagcaaagctccgacacaactcagagaggaatcctactctggccctaaacagaaaacttatt 22681265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 109 - 176
Target Start/End: Original strand, 22751709 - 22751776
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactct 176  Q
    ||||||||||||||||||| ||||||| |||| | |||||||| ||||| ||||||| ||||||||||    
T  22751709 agctccgacacaactcagagaggaatcttactttggccctaaacagaaagcttattctgtcatactct 22751776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 262
Target Start/End: Original strand, 31233673 - 31233805
Alignment:
Q  132 aatcctactatagccctaaatagaaaacttattccgtcatactctaaa-ctcctaagaattcgcctt-tatttacagataaatagaacattctagtgttt 229  Q
    ||||||||| |  ||||||||||||||||||||||||  ||||| ||| |||| || ||||| | || ||| |||| |||||  || ||||||| | |||    
T  31233673 aatcctactctgaccctaaatagaaaacttattccgttgtactccaaaactccaaaaaattctctttgtatatacaaataaagggagcattctaatattt 31233772  T
Q  230 aactctaatggaactcttattatttaatcctaa 262  Q
    ||||||||||   ||||||||||||||||||||    
T  31233773 aactctaatgagcctcttattatttaatcctaa 31233805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 44333665 - 44333623
Alignment:
Q  222 tagtgtttaactctaatggaactcttattatttaatcctaatg 264  Q
    |||| |||||| |||||||| ||||||||||||||||||||||    
T  44333665 tagtatttaaccctaatggacctcttattatttaatcctaatg 44333623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 17305067 - 17304933
Alignment:
Q  129 aggaatcctactatagccctaaatagaaaacttattccgtcatactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtt 228  Q
    |||||||||||| |   |||||| |||||||||||||  ||||||| |||||| |||||||||| ||||||| |||| ||||| ||||||||||| | ||    
T  17305067 aggaatcctactctgatcctaaacagaaaacttattctatcatactttaaacttctaagaattcccctttatatacaaataaagagaacattctaatatt 17304968  T
Q  229 taactctaatggaactcttattatttaatcctaat 263  Q
    |||| |||||||  ||||||||||| |||||||||    
T  17304967 taaccctaatgggcctcttattattaaatcctaat 17304933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 17306297 - 17306177
Alignment:
Q  77 aatagtagaagagagattctctaactactccca-------gctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtc 169  Q
    ||||||||||||||| |||||||||||||||||       |||||  || || ||||| ||||||| |||| || |||||||||||||||||||| ||||    
T  17306297 aatagtagaagagagtttctctaactactcccatagcaaagctcc--cataattcagagaggaatcatactctaaccctaaatagaaaacttatttcgtc 17306200  T
Q  170 atactctaaactcctaagaattc 192  Q
    |||||||||||||||||||||||    
T  17306199 atactctaaactcctaagaattc 17306177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 258
Target Start/End: Complemental strand, 19139501 - 19139322
Alignment:
Q  80 agtagaagagagattctctaactactccca-------gctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcata 172  Q
    |||||||||||| |||||||||||||||||       |||||||||||||| |||  ||||||||||| ||||| |||| | |||| ||||||||||  |    
T  19139501 agtagaagagagtttctctaactactcccaaagcaaagctccgacacaactgaga--ggaatcctactctagcc-taaacataaaagttattccgtccaa 19139405  T
Q  173 ctctaaa-ctcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaactcttattatttaatc 258  Q
    ||||||| ||||||||||||  ||||||    || ||||| ||| ||||||||| ||||||||||||||  ||||||||||||||||    
T  19139404 ctctaaaactcctaagaatttcccttta----catataaagagatcattctagtatttaactctaatgggcctcttattatttaatc 19139322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 17304743 - 17304624
Alignment:
Q  144 gccctaaatagaaaacttattccgtcatactctaaactcctaagaattcgcctttatttacagataaatagaacattctagtgtttaactctaatggaac 243  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||||| ||||||| |||  | ||  | ||||||||||| |||| |  |||||   |    
T  17304743 gccctaaaaaaaaaacttatttcgtcatactctaaactcctaagaattcccctttatatacgaaaaacgataacattctagtatttatccttaatgagcc 17304644  T
Q  244 tcttattatttaatcctaat 263  Q
    |||||||||| |||||||||    
T  17304643 tcttattattaaatcctaat 17304624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 242929 - 243073
Alignment:
Q  77 aatagtagaagagaga--ttctctaactactcccag-------ctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccg 167  Q
    ||||||||||||||||  ||||||||||||||||||       |||||||||||||||  || |||||||| | | |||||||| |||||||||||||||    
T  242929 aatagtagaagagagagtttctctaactactcccagagcaaagctccgacacaactca--taagaatcctaatctggccctaaacagaaaacttattccg 243026  T
Q  168 tcatactcta-aactcctaagaattcgcctttatttacagataaata 213  Q
    |||||||||| ||||| ||||||| | ||||||| |||| |||||||    
T  243027 tcatactctataactcttaagaatactcctttatatacaaataaata 243073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 247323 - 247393
Alignment:
Q  154 gaaaacttattccgtcatactcta-aactcctaagaattcgcctttatttacagataaatagaacattcta 223  Q
    |||||||| |||  |||||||||| ||||||||||||||| ||||||| |||| ||||| |||||||||||    
T  247323 gaaaacttcttcgttcatactctagaactcctaagaattcccctttatatacaaataaagagaacattcta 247393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 48294852 - 48294720
Alignment:
Q  109 agctccgacacaactcagataggaatcctactatagccctaaatagaaaacttattccgtcatactctaa-actcctaagaattcgcctttatttacaga 207  Q
    |||||||||  |||||| | |||||||||||| | | |||||| ||||||||||||||||| |||||||| | ||| ||||||||  |||||| |||| |    
T  48294852 agctccgacgtaactcaaagaggaatcctactctggtcctaaacagaaaacttattccgtcctactctaatattccaaagaattcctctttatatacaaa 48294753  T
Q  208 taaatagaacattctagtgtttaactctaatgg 240  Q
    |||| ||||||| ||| | |||||| |||||||    
T  48294752 taaagagaacatactattatttaaccctaatgg 48294720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 164
Target Start/End: Complemental strand, 26455 - 26403
Alignment:
Q  111 ctccgacacaactcagataggaatcctactatagccctaaatagaaaacttatt 164  Q
    ||||||||||||||||| |||||||||||| ||| |||||| ||||||| ||||    
T  26455 ctccgacacaactcagagaggaatcctactctag-cctaaacagaaaacgtatt 26403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University