View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_57 (Length: 267)
Name: NF4513_low_57
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 45974982 - 45974748
Alignment:
| Q |
1 |
gttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacatgctatttaggttc |
100 |
Q |
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| T |
45974982 |
gttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacatgctatttaggttc |
45974883 |
T |
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| Q |
101 |
acattgaacctttttcctgctacaggggcgctactatgaaccttatttgacaaagttttttacaaaatagcgtatcacggaaaaagagcaatatgttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974882 |
acattgaacctttttcctgctacaggggcgctactatgaatcttatttgacaaagttttttacaaaatagcgtatcacggaaaaagagcaatatgttcaa |
45974783 |
T |
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| Q |
201 |
attctcttatgctataagactaacgctgctatagc |
235 |
Q |
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| T |
45974782 |
attctcttatgctataagactaacgctgctatagc |
45974748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 45970446 - 45970242
Alignment:
| Q |
1 |
gttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacatgctatttaggttc |
100 |
Q |
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||||||||||||||||||||||||| ||||| ||||| | ||||| || | ||||||||||| |||||||| ||||||||| |||||||||||||||| |
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| T |
45970446 |
gttaataccgtgaaccttattaaggaagaaataactgtaaccaaactcttatcaatagtgctacattaaaattatgttacgcggcatgctatttaggttc |
45970347 |
T |
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| Q |
101 |
acattgaacctttttcctgctacaggggcgctactatgaaccttatttgacaaagttttttacaaaatagcgtatcacggaaaaagagcaatatgttcaa |
200 |
Q |
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| T |
45970346 |
acagtgaatattgttcctgctattgcggcgctactgtgaaccttattcg----agttttttactaaatagtgtttcacggaaaaagagcaatatgttcta |
45970251 |
T |
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| Q |
201 |
attctctta |
209 |
Q |
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||||||||| |
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| T |
45970250 |
attctctta |
45970242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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