View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_61 (Length: 254)
Name: NF4513_low_61
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 13105797 - 13106029
Alignment:
| Q |
8 |
catcatcaacaaaaatcccctcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttc |
107 |
Q |
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| T |
13105797 |
catcaacaacaaaaatcccctcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttc |
13105896 |
T |
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| Q |
108 |
aatatttctcacatctattgtgtacaactcactatgatttggagcaagaagtctataagttgcatgaattttggccatttgagcatggtaatcatagagt |
207 |
Q |
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| T |
13105897 |
aatatttctcacatctattgtgtacaactcactatgatttggtgcaagaagtctataagttggatgaattttggccaattgagcatggtaatcatagagt |
13105996 |
T |
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| Q |
208 |
ttcttgaagtagaaaagttggttgaacactgtg |
240 |
Q |
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| T |
13105997 |
ttcttgaagtagaaaagttggttgaacactgtg |
13106029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 13100011 - 13100237
Alignment:
| Q |
17 |
caaaaatcccctcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttcaatatttct |
116 |
Q |
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| T |
13100011 |
caaaaatcccctcaccaaaaagatctgtcataacatcttgactatacttacctctagaatatttatcaaaattggttttcaatacatgttcaatatttct |
13100110 |
T |
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| Q |
117 |
cacatctattgtgtacaac---tcactatgatttggagcaagaagtctataagttgcatgaattttggccatttgagcatggtaatcatagagtttcttg |
213 |
Q |
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| T |
13100111 |
cacatctattgtgtacaactgatcactttgatttggtgcaagaagtctataagttggatgaattttggccatttgagcttggtaatcatagagtttgttg |
13100210 |
T |
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| Q |
214 |
aagtagaaaagttggttgaacactgtg |
240 |
Q |
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| T |
13100211 |
aagtagaaaagatggttgaacactgtg |
13100237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 18670167 - 18669935
Alignment:
| Q |
8 |
catcatcaacaaaaatcccctcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttc |
107 |
Q |
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||||| || ||||||||||||||||||||||||| || |||||||||||| ||||||||||| ||||||| |||||||| || |||||||||| |||||| |
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| T |
18670167 |
catcaacagcaaaaatcccctcaccaaaaagatcagtaataatatcttgattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
18670068 |
T |
|
| Q |
108 |
aatatttctcacatctattgtgtacaactcactatgatttggagcaagaagtctataagttgcatgaattttggccatttgagcatggtaatcatagagt |
207 |
Q |
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| T |
18670067 |
aatatttctcacatctattctgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagt |
18669968 |
T |
|
| Q |
208 |
ttcttgaagtagaaaagttggttgaacactgtg |
240 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
18669967 |
ttcttgaagtagaatagttggttgaacactgtg |
18669935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 13115271 - 13115503
Alignment:
| Q |
8 |
catcatcaacaaaaatcccctcaccaaaaagatctgtcataatatcttgactatacttacctctagaatatttatcaaagtttgttttcaatacatgttc |
107 |
Q |
| |
|
||||| || |||||||||||||||||| |||||| || |||||||||| | ||||||||||| ||||||| |||||||| || |||||||||| |||||| |
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| T |
13115271 |
catcaacagcaaaaatcccctcaccaagaagatcagtaataatatctttattatacttacctttagaatacttatcaaaattggttttcaatatatgttc |
13115370 |
T |
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| Q |
108 |
aatatttctcacatctattgtgtacaactcactatgatttggagcaagaagtctataagttgcatgaattttggccatttgagcatggtaatcatagagt |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||| |||| || | ||||||||||||||||| |||| |
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| T |
13115371 |
aatatttctcacatctattgtgtacaactcactttgatttggtgcaagaagcctcatagttggatgagtttttgctaattgagcatggtaatcatggagt |
13115470 |
T |
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| Q |
208 |
ttcttgaagtagaaaagttggttgaacactgtg |
240 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
13115471 |
ttcttgaagttgaaaagttggttgaacactgtg |
13115503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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