View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_62 (Length: 253)
Name: NF4513_low_62
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_62 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 253
Target Start/End: Original strand, 12540247 - 12540485
Alignment:
| Q |
15 |
gaaccagaaaaccgatagcaccgaccacctcaaatcagacttgaaattcatcaaccgaatccttaacattcacacttcttcttaacgaaacaacgacgtt |
114 |
Q |
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| T |
12540247 |
gaaccagaaaaccgatagcaccgaccacctcaaatcagacttgaaattcatcaaccgaatccatagcattcacacttcttcttaacgaaacaacgacgtt |
12540346 |
T |
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| Q |
115 |
attaggataaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaatt |
214 |
Q |
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| T |
12540347 |
attaggataaattcagaaaacacatgcaatactcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaatt |
12540446 |
T |
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| Q |
215 |
attatgagaggaaccaccttcttgaacagctcgtctagc |
253 |
Q |
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| T |
12540447 |
attatgagaggaaccaccttcttgaacagctcgtctagc |
12540485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 253
Target Start/End: Original strand, 28384938 - 28385134
Alignment:
| Q |
57 |
gaaattcatcaaccgaatccttaacattcacacttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactcctttaatt |
156 |
Q |
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|||||||||| ||| ||| | ||||||| | |||| | ||| |||||||||||||||||||||||||| |||| ||||| ||| | ||| || ||| ||| |
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| T |
28384938 |
gaaattcatcgaccaaatacataacattaatacttgtgcttgacgaaacaacgacgttattaggataagttcaaaaaactcataccatattcatttgatt |
28385037 |
T |
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| Q |
157 |
aatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagc |
253 |
Q |
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| T |
28385038 |
aatcatgtggtttgctgtctctcaatcttttaagttcgtcgattaaagctaacaaattattataagaggaaccaccttctttaacagctcgtgtagc |
28385134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 147 - 253
Target Start/End: Complemental strand, 3418012 - 3417906
Alignment:
| Q |
147 |
tcctttaattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctc |
246 |
Q |
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| T |
3418012 |
tcctttaattaatcaagtggcttgcagtctctcaactttttaagttcgtcgatcaaagttaacaaattatgatgtgaggaaccaccttcttgaatagctc |
3417913 |
T |
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| Q |
247 |
gtctagc |
253 |
Q |
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|| |||| |
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| T |
3417912 |
gtttagc |
3417906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 13439829 - 13439992
Alignment:
| Q |
83 |
ttcacacttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactccttt-aattaatcatgtggcttgcagtctctaaa |
181 |
Q |
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||||||||||| ||| ||||| |||| | ||||||||||| || | |||||| | ||||| |||||| |||||||||||| ||||| |||||| || |
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| T |
13439829 |
ttcacacttctgcttgacgaaccaacaatattattaggataggttgaaaaaacatagacaatagtcctttgaattaatcatgtcgcttggggtctctcaa |
13439928 |
T |
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| Q |
182 |
tcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagct |
245 |
Q |
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| T |
13439929 |
tcttttaagttcttcaattaaagccaacaaattattataagacgagccaccttcttgaatagct |
13439992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 245
Target Start/End: Original strand, 13454468 - 13454626
Alignment:
| Q |
88 |
acttcttcttaacgaaacaacgacgttattaggataaattcagaaaacacatgcaatactccttt-aattaatcatgtggcttgcagtctctaaatcttt |
186 |
Q |
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|||||| ||| |||||||||| | |||||||| | || || | ||||| | |||| ||||||| ||||||||||| |||||| || ||| ||||||| |
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| T |
13454468 |
acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaattaatcatgcggcttgaggtttctcaatcttt |
13454567 |
T |
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| Q |
187 |
taatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagct |
245 |
Q |
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||| ||| || ||||||| ||||||||||||| ||| || ||||||| ||||| |||| |
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| T |
13454568 |
taagttcatcaatcaaagccaacaaattattataagatgagccacctttttgaatagct |
13454626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 245
Target Start/End: Original strand, 13448091 - 13448155
Alignment:
| Q |
181 |
atcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagct |
245 |
Q |
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| T |
13448091 |
atcttttaagttcgtcaatcaaagccaacaaattattataagacgagccaccttcttgaatagct |
13448155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 153 - 253
Target Start/End: Original strand, 48957844 - 48957944
Alignment:
| Q |
153 |
aattaatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctag |
252 |
Q |
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||||||||| ||| |||||||| ||| | | ||||| || || |||||||| |||||||| |||||||| || ||||||||||||||||||||| ||| |
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| T |
48957844 |
aattaatcaagtgtcttgcagtttctcatttgtttaagatcatcaatcaaagacaacaaattgttatgagatgatccaccttcttgaacagctcgtgtag |
48957943 |
T |
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| Q |
253 |
c |
253 |
Q |
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| T |
48957944 |
c |
48957944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 48960994 - 48961084
Alignment:
| Q |
156 |
taatcatgtggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctc |
246 |
Q |
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|||||| ||||||| | |||||| |||||||||| || || || |||| ||||||||||||||||| || || ||| |||||||||||| |
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| T |
48960994 |
taatcaagtggcttcctgtctctcaatcttttaagatcatcaattaaagccaacaaattattatgagatgagccgcctacttgaacagctc |
48961084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 48965040 - 48965129
Alignment:
| Q |
164 |
tggcttgcagtctctaaatcttttaatttcgtcgatcaaagataacaaattattatgagaggaaccaccttcttgaacagctcgtctagc |
253 |
Q |
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| T |
48965040 |
tggcttgctatctctcaatcttttgagatcatcaatcaaggctaacaaattcttatgagacgagccaccttcttgaatggctcgtctagc |
48965129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 12590595 - 12590548
Alignment:
| Q |
206 |
taacaaattattatgagaggaaccaccttcttgaacagctcgtctagc |
253 |
Q |
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|||||||||||||| |||||| ||||||| |||||||||| ||||||| |
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| T |
12590595 |
taacaaattattattagaggagccaccttgttgaacagctagtctagc |
12590548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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