View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_66 (Length: 250)
Name: NF4513_low_66
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 28438130 - 28438362
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
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| T |
28438130 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgtttcttgaaataatttgttgtagaaaaaatgtag |
28438229 |
T |
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| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaataacttggaccttcttctagaaaatgaatgtga |
200 |
Q |
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| T |
28438230 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaataatttggaccttcttctagaaaatgaatgtga |
28438329 |
T |
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| Q |
201 |
ggttgtcaatgaaattagtagagtggaaaaatt |
233 |
Q |
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| T |
28438330 |
ggttgtcaatgaaatgagtagagtggaaaaatt |
28438362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28466425 - 28466591
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
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| T |
28466425 |
gcaccagattggtttaggagtgcaccaatcactgcaaaggttgatacttatagttttggtgtattgttgttagagatcatttgttgtaggaaaaatgtag |
28466524 |
T |
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| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaa |
167 |
Q |
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| T |
28466525 |
agaaagaaattttcactgaagaacaagggattttaactgattgggcttatgattgctataagactaa |
28466591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28488186 - 28488352
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| ||| ||||||||||| ||||| | ||||| ||||||||||| |||||||||| |
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| T |
28488186 |
gcaccagattggtttaggagtgcaccaatcacttcaaaggttgatacttatagttttggtgtattgttgttagaaatcatttgttgtaggaaaaatgtag |
28488285 |
T |
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| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaa |
167 |
Q |
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| T |
28488286 |
agagagaattttttactgaagaaaaagggattttaactgattgggcttatgattgctataagactaa |
28488352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 28445579 - 28445745
Alignment:
| Q |
1 |
gcaccagattggtttaggagtgcaccaatcagcgctaaggttgatgtttacagttttggtgtcttgttacttgaaataatttgttgtagaaaaaatgtag |
100 |
Q |
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||||||||||||||||||||||||||||||| || ||||||||| ||| ||||||||||| || || | || ||||| |||||||| ||||| |||| |
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| T |
28445579 |
gcaccagattggtttaggagtgcaccaatcactgcaaaggttgatacttatagttttggtgtattattgttagagataatatgttgtaggaaaaacgtag |
28445678 |
T |
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| Q |
101 |
agcatgaaaatgcaagtgaagaaaagaggattttaactgattgggcatatgattgctacaaggctaa |
167 |
Q |
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|| | ||| | | |||||||| ||||||||||||||||||| ||||||||||||||| |||| |
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| T |
28445679 |
agaaagaattttttaccgaagaaaaagggattttaactgattgggcttatgattgctacaagactaa |
28445745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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