View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_69 (Length: 248)
Name: NF4513_low_69
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_69 |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 1252240 - 1252486
Alignment:
| Q |
1 |
ctcccccatatcgtcacccagaaaactttcaccatcatattcccacatgcaatcattgtccaagtcannnnnnn-accattgttatcatcaaacatccct |
99 |
Q |
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| T |
1252240 |
ctcccccatatcgtcacccagaaaactttcaccatcatattcccacatgcaatcattgtccaagtcattttttttaccattgttatcatcaaacatccct |
1252339 |
T |
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| Q |
100 |
ttaaaacatgtcaaaataagtttatcaagcaatttttgaaaagatgtttttcaattgatattggcatatagttttttaatttacttaaaaagatttgtct |
199 |
Q |
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| T |
1252340 |
ttaaaacatgtcaaaataagtttatcaagcaatttttaaaaagatgtttttcaattaatattggcatatagttttttaatttactt--caagatttgtct |
1252437 |
T |
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| Q |
200 |
tataaaagataggttgaacattcttacagtatattatttcaaaacagaa |
248 |
Q |
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| T |
1252438 |
tgtaaaagataggttgaacattcttacagtatattatttcaaaacagaa |
1252486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 42019013 - 42019278
Alignment:
| Q |
1 |
ctcccccatatcgtcacccagaaaactttcaccatcatattcccacatgcaatc----------attgtccaagtcannnnnnn-accattgttatcatc |
89 |
Q |
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| T |
42019013 |
ctcccccatatcgtcacccagaaaactttcagcatcatattcccacatgcaatccttcacaatcattgtccaagtcattttttttaccattgttatcatc |
42019112 |
T |
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| Q |
90 |
aaacatccctttaaaacatgtcaaaataagtttatcaagcaatttttgaaa-------agatgtttttcaattgatattggcatatagttttttaattta |
182 |
Q |
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| T |
42019113 |
aaacatccctttaaaacatgccaaaataagtttatcaagcaatttttaaaatttttaaagatgtttttcaattaatattggcatatagttttttaattta |
42019212 |
T |
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| Q |
183 |
cttaaaaagatttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaa |
248 |
Q |
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| T |
42019213 |
cttaaaaagatttgtcttataaaagataggttgaacattcttacagtatattatttcaaaacagaa |
42019278 |
T |
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