View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_7 (Length: 586)

Name: NF4513_low_7
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_7
NF4513_low_7
[»] chr1 (16 HSPs)
chr1 (17-272)||(52750878-52751140)
chr1 (89-269)||(24508937-24509123)
chr1 (445-539)||(52751290-52751384)
chr1 (448-530)||(24509185-24509266)
chr1 (442-530)||(50124321-50124405)
chr1 (466-530)||(29021826-29021890)
chr1 (481-530)||(52750403-52750452)
chr1 (481-530)||(31697367-31697416)
chr1 (373-416)||(52751204-52751247)
chr1 (481-538)||(968156-968213)
chr1 (476-528)||(47112345-47112397)
chr1 (186-228)||(44008175-44008217)
chr1 (481-530)||(968215-968264)
chr1 (476-527)||(968917-968968)
chr1 (481-528)||(36142366-36142413)
chr1 (471-530)||(24508445-24508506)
[»] chr3 (10 HSPs)
chr3 (27-272)||(33389898-33390147)
chr3 (91-269)||(52255000-52255184)
chr3 (442-530)||(54834184-54834272)
chr3 (444-530)||(52255247-52255332)
chr3 (476-528)||(34817582-34817634)
chr3 (491-530)||(33389422-33389461)
chr3 (476-528)||(32305024-32305076)
chr3 (476-528)||(42540954-42541006)
chr3 (373-416)||(33390211-33390254)
chr3 (482-530)||(52254514-52254564)
[»] chr2 (9 HSPs)
chr2 (17-272)||(3093819-3094078)
chr2 (481-530)||(10708383-10708432)
chr2 (481-530)||(3093390-3093438)
chr2 (476-528)||(8029762-8029814)
chr2 (476-528)||(20685883-20685935)
chr2 (476-528)||(40468848-40468900)
chr2 (481-530)||(12602345-12602395)
chr2 (476-527)||(28189700-28189751)
chr2 (476-528)||(19298323-19298375)
[»] chr4 (15 HSPs)
chr4 (44-269)||(13630474-13630705)
chr4 (91-269)||(44183291-44183475)
chr4 (91-269)||(50282405-50282589)
chr4 (445-538)||(13630333-13630425)
chr4 (446-530)||(44183542-44183625)
chr4 (442-530)||(45044624-45044711)
chr4 (444-530)||(50282652-50282737)
chr4 (141-269)||(9091824-9091962)
chr4 (444-530)||(9091674-9091758)
chr4 (481-528)||(9087095-9087142)
chr4 (499-530)||(45045065-45045096)
chr4 (481-530)||(26280323-26280372)
chr4 (493-530)||(26281017-26281054)
chr4 (485-530)||(44182798-44182845)
chr4 (481-530)||(50281915-50281966)
[»] chr6 (9 HSPs)
chr6 (44-269)||(902190-902421)
chr6 (442-532)||(902472-902562)
chr6 (481-530)||(901659-901708)
chr6 (476-528)||(12261244-12261296)
chr6 (476-528)||(27129095-27129147)
chr6 (481-528)||(20746382-20746429)
chr6 (476-528)||(16146331-16146383)
chr6 (361-416)||(10999016-10999071)
chr6 (492-528)||(20746437-20746473)
[»] chr7 (10 HSPs)
chr7 (91-268)||(17236790-17236973)
chr7 (442-538)||(30474884-30474979)
chr7 (442-530)||(14682710-14682798)
chr7 (444-528)||(17238358-17238441)
chr7 (481-530)||(8684969-8685018)
chr7 (476-530)||(18298067-18298121)
chr7 (476-528)||(17278652-17278704)
chr7 (476-528)||(30765920-30765972)
chr7 (481-530)||(17236299-17236350)
chr7 (481-530)||(25443251-25443301)
[»] chr5 (6 HSPs)
chr5 (442-530)||(38385122-38385209)
chr5 (476-528)||(6794535-6794587)
chr5 (476-527)||(23082793-23082844)
chr5 (499-530)||(38385577-38385608)
chr5 (481-530)||(13824397-13824447)
chr5 (481-530)||(24041991-24042041)
[»] scaffold0202 (1 HSPs)
scaffold0202 (476-528)||(21961-22013)
[»] chr8 (1 HSPs)
chr8 (476-528)||(13462358-13462410)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 3e-99; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 52750878 - 52751140
Alignment:
Q  17 agtcacaaccagag--agattttgatgaagatgtatacacccttctaactccactcggcctctcttcctctataaattcctctttattcgaccccagcca 114  Q
    ||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||||| |||||||||||||    
T  52750878 agtcacaaccagagagagattttgatgaagatgtatacatccttctaactccactcgacctctctccctctatcaattcctctttactcgaccccagcca 52750977  T
Q  115 aatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacagttgaaaactg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     |||||||||||||||||||| ||     
T  52750978 aatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatcttaagattgaacagttgaaagctt 52751077  T
Q  210 aaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 272  Q
    ||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  52751078 aaattatacgattggatgagtagtataaggtgaggatattaattcattgatatctttagaaaa 52751140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 89 - 269
Target Start/End: Original strand, 24508937 - 24509123
Alignment:
Q  89 aattcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat--- 185  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||       
T  24508937 aattcctctttactcaacccaagccaaatctaagaaattgcagtaatgggtcaagtagttgaaggagaaagaagaaaggttatttgcggagatctatgga 24509036  T
Q  186 --ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 269  Q
      |||||||||||||| |||||  ||||||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||||    
T  24509037 tcttaagattgaacagatgaaagttgaaattttacaattggatgagtagttataaggtgaaggtattagtttattgatatctttaga 24509123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 445 - 539
Target Start/End: Original strand, 52751290 - 52751384
Alignment:
Q  445 ttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatgaa 539  Q
    |||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||    
T  52751290 ttgtttggtaaattaaagtgcttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgatgataatgaa 52751384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 448 - 530
Target Start/End: Original strand, 24509185 - 24509266
Alignment:
Q  448 tttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24509185 tttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 24509266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 442 - 530
Target Start/End: Original strand, 50124321 - 50124405
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||    
T  50124321 ttgttgtttggtaaattaaagtgattttttttagtgaacaaattg----ttgattgagttatgaaattgattatgtttatagatttgat 50124405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 466 - 530
Target Start/End: Complemental strand, 29021890 - 29021826
Alignment:
Q  466 ttttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  29021890 ttttttttagtgaacaaattggttgttgattgagttatgaaattgattttgtttatagatttgat 29021826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 52750452 - 52750403
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  52750452 aaattggttattgattgagttatgaaattgattatgtttatagatttgat 52750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 31697416 - 31697367
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  31697416 aaattggttattgattgagatatgaaattgattatgtttatagatttgat 31697367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 52751204 - 52751247
Alignment:
Q  373 gagttggttgatatcgttagagaagcacagcggttgttgttatg 416  Q
    ||||||||||||||| ||||||||||||||||||||||||||||    
T  52751204 gagttggttgatatctttagagaagcacagcggttgttgttatg 52751247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 968213 - 968156
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 538  Q
    ||||||||| |||||| || |||||||||||||||||||||| ||||||| |||||||    
T  968213 aaattggttattgattaagatatgaaattgattatgtttataaatttgatgatgatga 968156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 47112397 - 47112345
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  47112397 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 47112345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 44008175 - 44008217
Alignment:
Q  186 ttaagattgaacagttgaaaactgaaattttacaattggatga 228  Q
    ||||||||||||| |||||| ||||||||||||||||||||||    
T  44008175 ttaagattgaacaattgaaagctgaaattttacaattggatga 44008217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 968264 - 968215
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| |||||| || |||||||||||||||||||||| |||||||    
T  968264 aaattggttattgattaagatatgaaattgattatgtttataaatttgat 968215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 527
Target Start/End: Original strand, 968917 - 968968
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 527  Q
    |||| ||||||||  ||||||||| |||||||||| ||||||||||||||||    
T  968917 tgaaaaaattggtgattgattgagatatgaaattgtttatgtttatagattt 968968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 528
Target Start/End: Complemental strand, 36142413 - 36142366
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||||| || |||||| ||||||||||||||||||||||||| |||||    
T  36142413 aaattgattattgattaagttatgaaattgattatgtttatatatttg 36142366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 530
Target Start/End: Complemental strand, 24508506 - 24508445
Alignment:
Q  471 tttagtgaacaaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 530  Q
    |||| |||| ||||||||| ||| |||||||||||||| |||  ||||||||||||||||||    
T  24508506 tttaatgaaaaaattggttattggttgagttatgaaatagattatatgtttatagatttgat 24508445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 9e-87; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 27 - 272
Target Start/End: Original strand, 33389898 - 33390147
Alignment:
Q  27 agagagattttgatgaagatgtatacacccttctaactccactcggcctctcttcctctataaattcctctttattcgaccccagccaaatctaagaaat 126  Q
    |||||||||||||||||||||||||||| |||||||||||||||  ||||||| |||| || |||||||||||| |||||||||||||||||||||||||    
T  33389898 agagagattttgatgaagatgtatacactcttctaactccactcaacctctctccctc-atcaattcctctttactcgaccccagccaaatctaagaaat 33389996  T
Q  127 tgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacagttgaaaactgaaattttacaat 221  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||     |||||||||||||||||||| |||||||||||| ||    
T  33389997 tgcagtaatgggtcaagtagtagaagcagagagaagaaaggttatttgcggagatctatggatcttaagattgaacagttgaaagctgaaattttacgat 33390096  T
Q  222 tggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 272  Q
    ||  ||| || ||||||||||||||||||||||||||||||||||||||||    
T  33390097 tgagtgagtattataaggtgaggatattagttcattgatatctttagaaaa 33390147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 52255000 - 52255184
Alignment:
Q  91 ttcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat----- 185  Q
    |||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||         
T  52255000 ttcctctttactcaacccaagccaaatctaagaaattgcattaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatc 52255099  T
Q  186 ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 269  Q
    ||||||||||||||||||||  |||||||||||||||||| || ||| |||||||||| | |||||||| |||||||||||||||    
T  52255100 ttaagattgaacagttgaaagttgaaattttacaattggaagagtagttataaggtgaaggtattagtttattgatatctttaga 52255184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 442 - 530
Target Start/End: Complemental strand, 54834272 - 54834184
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54834272 ttgttgtttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgat 54834184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 530
Target Start/End: Original strand, 52255247 - 52255332
Alignment:
Q  444 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52255247 gttgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatatgat 52255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 34817634 - 34817582
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  34817634 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttg 34817582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 491 - 530
Target Start/End: Complemental strand, 33389461 - 33389422
Alignment:
Q  491 ttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33389461 ttgattgagttatgaaattgattatgtttatagatttgat 33389422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 32305024 - 32305076
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  32305024 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 32305076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 42540954 - 42541006
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  42540954 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 42541006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 373 - 416
Target Start/End: Original strand, 33390211 - 33390254
Alignment:
Q  373 gagttggttgatatcgttagagaagcacagcggttgttgttatg 416  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  33390211 gagttggttgatatctttagagaagcacaacggttgttgttatg 33390254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 530
Target Start/End: Complemental strand, 52254564 - 52254514
Alignment:
Q  482 aattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 530  Q
    |||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  52254564 aattggttattgattgagttatgaaatggattatatgtttatagatttgat 52254514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 158; Significance: 9e-84; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 3093819 - 3094078
Alignment:
Q  17 agtcacaaccagagagattttgatgaagatgtatac------acccttctaactccactcggcctctcttcctctataaattcctctttattcgacccca 110  Q
    ||||| ||||||||||||||||||||||||||||||      ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  3093819 agtcataaccagagagattttgatgaagatgtatacacatacacccttctaactccactcgacctctctccctctataaattcctctttattcgacccca 3093918  T
Q  111 gccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacagttgaaa 205  Q
     ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||| | |||||| |     ||||||||||| ||||||||    
T  3093919 accaaatctaagaaattgcagtaatgggtcaagtagtagaagg-------agaaaggttatttgtggagatctgtggatcttaagattgaagagttgaaa 3094011  T
Q  206 actgaaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 272  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3094012 gcttaaattttacaattggatgactagtataaggtgaggatattagttcattgatatctttagaaaa 3094078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 10708432 - 10708383
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10708432 aaattggttattgattgagttatgaaattgattatgtttatagatttgat 10708383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 3093438 - 3093390
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3093438 aaattggttattgattgagttatgaaatt-attatgtttatagatttgat 3093390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 8029762 - 8029814
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  8029762 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 8029814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 20685935 - 20685883
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20685935 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 20685883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 40468848 - 40468900
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  40468848 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 40468900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 530
Target Start/End: Original strand, 12602345 - 12602395
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 530  Q
    ||||||||| ||||||||| ||||||||||||| |||||||||||||||||    
T  12602345 aaattggttattgattgagatatgaaattgattaatgtttatagatttgat 12602395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 476 - 527
Target Start/End: Complemental strand, 28189751 - 28189700
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 527  Q
    |||| |||||| || |||||| ||||||||||||||||||||||||| ||||    
T  28189751 tgaaaaaattgattattgattaagttatgaaattgattatgtttatatattt 28189700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 19298323 - 19298375
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| | |||||||||||||| |||||||| |||||    
T  19298323 tgaaaaaattggttattgattaaattatgaaattgattttgtttatatatttg 19298375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 5e-73; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 44 - 269
Target Start/End: Complemental strand, 13630705 - 13630474
Alignment:
Q  44 gatgtatacacccttctaactccactcggcctctcttcctctataaattcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaag 143  Q
    ||||||||||||||||||| |||||||| ||||||| ||||||| |||||||||||| |||| || ||||||||||| ||||||||||||||||||||||    
T  13630705 gatgtatacacccttctaattccactcgacctctctccctctatcaattcctctttactcgatcctagccaaatctaggaaattgcagtaatgggtcaag 13630606  T
Q  144 tagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataa 237  Q
    ||||||||||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||    
T  13630605 tagtagaaggagaaagaagaaaggttatttgcagagatccatggatcttaagattgaacagttgaaagctgaaattttacgattggatgagtagttataa 13630506  T
Q  238 ggtgaggatattagttcattgatatctttaga 269  Q
    ||||| | ||||||||||||||||||||||||    
T  13630505 ggtgaaggtattagttcattgatatctttaga 13630474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 44183291 - 44183475
Alignment:
Q  91 ttcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat----- 185  Q
    |||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||         
T  44183291 ttcctctttactcaacccaagccaaatctaagaaattgcattaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatc 44183390  T
Q  186 ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 269  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||||||    
T  44183391 ttaagattgaacagttgaaagttgaaattttacaattggatgagtagttataaggtgaaggtattagtttattgatatctttaga 44183475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 91 - 269
Target Start/End: Original strand, 50282405 - 50282589
Alignment:
Q  91 ttcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat----- 185  Q
    |||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||         
T  50282405 ttcctctttactcaacccaagccaaatctaagaaattgcattaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcggagatctatggatc 50282504  T
Q  186 ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttaga 269  Q
    ||||||||||||| ||||||  ||||||||||||||| ||||| ||| |||||||||| | |||||||| |||||||| ||||||    
T  50282505 ttaagattgaacatttgaaagttgaaattttacaatttgatgagtagttataaggtgaaggtattagtttattgatatttttaga 50282589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 445 - 538
Target Start/End: Complemental strand, 13630425 - 13630333
Alignment:
Q  445 ttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 538  Q
    ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13630425 ttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatga 13630333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 446 - 530
Target Start/End: Original strand, 44183542 - 44183625
Alignment:
Q  446 tgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44183542 tgtttggtaaattaaagtgatttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 44183625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 442 - 530
Target Start/End: Complemental strand, 45044711 - 45044624
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  45044711 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttattgattgagttatgaaattgattatgtttatatatttgat 45044624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 444 - 530
Target Start/End: Original strand, 50282652 - 50282737
Alignment:
Q  444 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50282652 gttgtttggtaaattaaagtgacttttttta-tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 50282737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 141 - 269
Target Start/End: Complemental strand, 9091962 - 9091824
Alignment:
Q  141 aagtagtagaaggagaaagaagaaaggttatttgcgaagatctat---------ttaagattgaacagttgaaaactgaaattttacaattggatgacta 231  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||         ||||||||||||| ||||||  ||||||||||||||||||||| ||    
T  9091962 aagtagttgaaggagaaagaagaaatgttatttgcggagatctatgtatggattttaagattgaacaattgaaagttgaaattttacaattggatgagta 9091863  T
Q  232 g-tataaggtgaggatattagttcattgatatctttaga 269  Q
    | ||||||||||   |||||||| |||||||||||||||    
T  9091862 gttataaggtgaaagtattagtttattgatatctttaga 9091824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 444 - 530
Target Start/End: Complemental strand, 9091758 - 9091674
Alignment:
Q  444 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||| |||||  ||  ||||||||||| ||||| |||||||||||||||||| || |||||||||||||||    
T  9091758 gttgtttggtaaattaaagtgatttt--ttcatgaacaaattgcttgttaattgagttatgaaattgaatacgtttatagatttgat 9091674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 528
Target Start/End: Original strand, 9087095 - 9087142
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  9087095 aaattggttattgattaagttatgaaattgattatgtttatatatttg 9087142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 45045065 - 45045096
Alignment:
Q  499 gttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||||||||||||||||||||||||||    
T  45045065 gttatgaaattgattatgtttatagatttgat 45045096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 26280372 - 26280323
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| |||||| || ||||||||| |||||||||||| |||||||    
T  26280372 aaattggttattgattaagatatgaaattcattatgtttataaatttgat 26280323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 493 - 530
Target Start/End: Original strand, 26281017 - 26281054
Alignment:
Q  493 gattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  26281017 gattgagatatgaaattgtttatgtttatagatttgat 26281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 530
Target Start/End: Complemental strand, 44182845 - 44182798
Alignment:
Q  485 tggttgttgattgagttatgaaattgat--tatgtttatagatttgat 530  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  44182845 tggttattgattgagttatgaaatggattatatgtttatagatttgat 44182798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 50281966 - 50281915
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 530  Q
    |||||| || |||||||||||||||||| |||  ||||||||||||||||||    
T  50281966 aaattgattattgattgagttatgaaatggattatatgtttatagatttgat 50281915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 1e-70; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 44 - 269
Target Start/End: Original strand, 902190 - 902421
Alignment:
Q  44 gatgtatacacccttctaactccactcggcctctcttcctctataaattcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaag 143  Q
    ||||||||||||||||||| |||||||| || |||| ||||||| |||||||||||| |||| ||||||||||||||||||||||| ||||| |||||||    
T  902190 gatgtatacacccttctaattccactcgaccactctccctctatcaattcctctttactcgatcccagccaaatctaagaaattgcggtaattggtcaag 902289  T
Q  144 tagtagaaggagaaagaagaaaggttatttgcgaagatctat-----ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataa 237  Q
    ||||||||||||||||||||||||||||||||  ||||||||     |||||||||||||||||||| |||||||||||| ||||||||| ||| |||||    
T  902290 tagtagaaggagaaagaagaaaggttatttgcatagatctatgaatcttaagattgaacagttgaaagctgaaattttacgattggatgagtagttataa 902389  T
Q  238 ggtgaggatattagttcattgatatctttaga 269  Q
    ||||| | ||||| ||||||||||||||||||    
T  902390 ggtgaaggtattaattcattgatatctttaga 902421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 442 - 532
Target Start/End: Original strand, 902472 - 902562
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataa 532  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  902472 ttgttgtttggtaaattaaactgattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataa 902562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 901708 - 901659
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  901708 aaattggttattgattgagttatgaaatagattatgtttatagatttgat 901659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 12261244 - 12261296
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  12261244 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 12261296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 27129147 - 27129095
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  27129147 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 27129095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 528
Target Start/End: Original strand, 20746382 - 20746429
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  20746382 aaattggttattgattaagttatgaaattgattatgtttatatatttg 20746429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 16146383 - 16146331
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| |||||||||||||||| |||||||| |||||    
T  16146383 tgaaaaaattggttattgattaagttatgaaattgattttgtttatatatttg 16146331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 361 - 416
Target Start/End: Complemental strand, 10999071 - 10999016
Alignment:
Q  361 agtgagttggacgagttggttgatatcgttagagaagcacagcggttgttgttatg 416  Q
    ||||| ||||||||||||||||||||  ||||||||| | || |||||||||||||    
T  10999071 agtgatttggacgagttggttgatatatttagagaagtatagtggttgttgttatg 10999016  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 492 - 528
Target Start/End: Original strand, 20746437 - 20746473
Alignment:
Q  492 tgattgagttatgaaattgattatgtttatagatttg 528  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  20746437 tgattaagttatgaaattgattatgtttatatatttg 20746473  T

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Target: chr7 (Bit Score: 96; Significance: 9e-47; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 91 - 268
Target Start/End: Original strand, 17236790 - 17236973
Alignment:
Q  91 ttcctctttattcgaccccagccaaatctaagaaattgcagtaatgggtcaagtagtagaaggagaaagaagaaaggttatttgcgaagatctat----- 185  Q
    |||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||         
T  17236790 ttcctctttactcaacccaagccaaatctaagaaattgcattaatgggtcaagtagtagaatgagaaagaagaaaggttatttgcggagatctatggatc 17236889  T
Q  186 ttaagattgaacagttgaaaactgaaattttacaattggatgactag-tataaggtgaggatattagttcattgatatctttag 268  Q
    ||||||||||||| ||||||  ||||||||||||||||||||| | | |||||||| | | |||||||| ||||||||||||||    
T  17236890 ttaagattgaacaattgaaagttgaaattttacaattggatgagttgttataaggtaaaggtattagtttattgatatctttag 17236973  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 442 - 538
Target Start/End: Original strand, 30474884 - 30474979
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataatgatga 538  Q
    ||||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  30474884 ttgttgtttggtaaattaaagtgttttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgataaagatga 30474979  T

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Target: chr7; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 442 - 530
Target Start/End: Original strand, 14682710 - 14682798
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||| ||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14682710 ttgttggttggtaaattaaagtgattttttttagtgaataaattggttgttgattgagttatgaaattgattatgtttatagatttgat 14682798  T

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Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 444 - 528
Target Start/End: Original strand, 17238358 - 17238441
Alignment:
Q  444 gttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  17238358 gttgtttggtaaattaaagtgatttttttta-tgaacaaattgattgttgattgagttatgaaattgattatgtttatagatttg 17238441  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 8685018 - 8684969
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  8685018 aaattggttgttgattgagttataaaattgattatgtttataggtttgat 8684969  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 476 - 530
Target Start/End: Original strand, 18298067 - 18298121
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||| ||||||||| ||||||||| |||||||||| |||||||||||||||||||    
T  18298067 tgaaaaaattggttattgattgagatatgaaattgtttatgtttatagatttgat 18298121  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 17278704 - 17278652
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  17278704 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 17278652  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 30765972 - 30765920
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  30765972 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 30765920  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 17236350 - 17236299
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgat--tatgtttatagatttgat 530  Q
    ||||||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  17236350 aaattggttattgattgagttatgaaatggattatatgtttatagatttgat 17236299  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 25443301 - 25443251
Alignment:
Q  481 aaattggttgttgattgagttatgaaattga-ttatgtttatagatttgat 530  Q
    ||||||||| | ||||||||||||||||| | |||||||||||||||||||    
T  25443301 aaattggttatagattgagttatgaaattaatttatgtttatagatttgat 25443251  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 442 - 530
Target Start/End: Complemental strand, 38385209 - 38385122
Alignment:
Q  442 ttgttgtttggtaaattaaagtcattttctttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 530  Q
    |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38385209 ttgttgtttggtaaattaaagtgatttt-tttagtgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttgat 38385122  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 6794535 - 6794587
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  6794535 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 6794587  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 476 - 527
Target Start/End: Complemental strand, 23082844 - 23082793
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagattt 527  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| ||||    
T  23082844 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatattt 23082793  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 499 - 530
Target Start/End: Original strand, 38385577 - 38385608
Alignment:
Q  499 gttatgaaattgattatgtttatagatttgat 530  Q
    ||||||||||||||||||||||||||||||||    
T  38385577 gttatgaaattgattatgtttatagatttgat 38385608  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 530
Target Start/End: Original strand, 13824397 - 13824447
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 530  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  13824397 aaattggttattgatggagatatgaaattgattaatgtttatagatttgat 13824447  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 530
Target Start/End: Complemental strand, 24042041 - 24041991
Alignment:
Q  481 aaattggttgttgattgagttatgaaattgatt-atgtttatagatttgat 530  Q
    ||||||||| ||||| ||| ||||||||||||| |||||||||||||||||    
T  24042041 aaattggttattgatggagatatgaaattgattaatgtttatagatttgat 24041991  T

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Target: scaffold0202 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 528
Target Start/End: Original strand, 21961 - 22013
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  21961 tgaaaaaattggttattgattaagttatgaaattgattatgtttatagatttg 22013  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 476 - 528
Target Start/End: Complemental strand, 13462410 - 13462358
Alignment:
Q  476 tgaacaaattggttgttgattgagttatgaaattgattatgtttatagatttg 528  Q
    |||| ||||||||| |||||| ||||||||||||||||||||||||| |||||    
T  13462410 tgaaaaaattggttattgattaagttatgaaattgattatgtttatatatttg 13462358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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