View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_75 (Length: 246)
Name: NF4513_low_75
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_75 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 229
Target Start/End: Original strand, 38101865 - 38102082
Alignment:
| Q |
12 |
aagaatgcaaattgtatattttggggactttggcaggttaatatatgaaacttataactctttaatatttttccttaannnnnnnattcaatgcagaggc |
111 |
Q |
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| T |
38101865 |
aagaatgcaaattgtatattttggggactttggcaggttaatatatgaaacttataactctttaatatttttccttaatttttttattcaatgcagaggc |
38101964 |
T |
|
| Q |
112 |
atgtggttgatttttacatctctgacttccaatctggactgagagcattggttaaaacaggctttggtgcaagggtgactccttatgttgatgattccgt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38101965 |
atgtggttgatttttacatctctgacttccaatctggactgagagcattggttaaaacaggctttggtgcaagggtgactccttatgttgatgattccgt |
38102064 |
T |
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| Q |
212 |
tgtaattgatgttaatcc |
229 |
Q |
| |
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|||||||||||||||||| |
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| T |
38102065 |
tgtaattgatgttaatcc |
38102082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 229
Target Start/End: Complemental strand, 300594 - 300392
Alignment:
| Q |
13 |
agaatgcaaattgtatattttggggactttggcaggttaatatatgaaacttataactctttaatatttttccttaannnnnnnattcaatgcagaggca |
112 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
300594 |
agaatgcaaattgtatattttggggactttggctggttaatatatgaaacttat-------------ttttccttaattttct-attcaatgcagaggca |
300509 |
T |
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| Q |
113 |
tgtggttgatttttacatctctgacttccaatctggactgagagcattggttaaaacaggctttggtgcaagggtgactccttatgttgatgattccgtt |
212 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
300508 |
tgtggttgatttttacatctctgacttccaatctggattgagagctttggttaaaacagggtttggtgcaagggtgactccttatgttgatgattccgtt |
300409 |
T |
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| Q |
213 |
gtaattgatgttaatcc |
229 |
Q |
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||||||||||||||||| |
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| T |
300408 |
gtaattgatgttaatcc |
300392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 205
Target Start/End: Original strand, 1322541 - 1322641
Alignment:
| Q |
105 |
cagaggcatgtggttgatttttacatctctgacttccaatctggactgagagcattggttaaaacaggctttggtgcaagggtgactccttatgttgatg |
204 |
Q |
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||||||| ||||||||||||||||||||| || ||||| ||||| | || |||||||| || || || ||| ||||| ||||| ||||||||||||| |
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| T |
1322541 |
cagaggcgtgtggttgatttttacatctcagatttccagtctggtttaagggcattggtcaagactggtcatggagcaagagtgaccccttatgttgatg |
1322640 |
T |
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| Q |
205 |
a |
205 |
Q |
| |
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| |
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| T |
1322641 |
a |
1322641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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