View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_78 (Length: 241)
Name: NF4513_low_78
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_78 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 36744958 - 36744739
Alignment:
| Q |
18 |
caatacacatatatttaccttttctactgtgagtccatccgtgttaatctccaagtgttcttttgttattgtactagtttgatctccatagacattggga |
117 |
Q |
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| T |
36744958 |
caatacacatatatttaccttttctactgtgagtccatccgtgttaatctccaagtgttcttttgttattgtactagtttgatctccatagacattggga |
36744859 |
T |
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| Q |
118 |
tctagcttgctttcgggtggaaacacctatcattcattcattaatcaatgaaaataattacatatgaggaagaattacaaatttagaaattaagaattat |
217 |
Q |
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| T |
36744858 |
tctagcttgctttcgggtggaaacacctatcatt----cattaatcaatgaaaataatgtcatatgaggaagaattacaaatttacaaattaagaattat |
36744763 |
T |
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| Q |
218 |
atgctacttttagttttatcttac |
241 |
Q |
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| T |
36744762 |
atgctactttttgttttatcttac |
36744739 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 141
Target Start/End: Original strand, 6457367 - 6457438
Alignment:
| Q |
70 |
aagtgttcttttgttattgtactagtttgatctccatagacattgggatctagcttgctttcgggtggaaac |
141 |
Q |
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| T |
6457367 |
aagtgttcttttgttattgtactgttttgatcaccatagacagtggtatctagtgtgctttttggtggaaac |
6457438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 122
Target Start/End: Original strand, 6451177 - 6451234
Alignment:
| Q |
65 |
tctccaagtgttcttttgttattgtactagtttgatctccatagacattgggatctag |
122 |
Q |
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| T |
6451177 |
tctctaagtgttcttttgttattgtgctattttgatcaccatagacagtggcatctag |
6451234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 36924904 - 36924846
Alignment:
| Q |
72 |
gtgttcttttgttattgtactagtttgatctccatagacattgggatctagcttgcttt |
130 |
Q |
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| T |
36924904 |
gtgttctttagttattttactggattgatcaccatagactttgtgatctagcttgcttt |
36924846 |
T |
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