View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_low_80 (Length: 240)
Name: NF4513_low_80
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_80 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2624097 - 2623858
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
2624097 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttggactaatttctcagattgactatcaa |
2623998 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2623997 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
2623898 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
2623897 |
tctgtcaccacacaatgtgtcatatccatcttttaagctt |
2623858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2592553 - 2592314
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
2592553 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagcatcttggactaatttctctgattgactatcaa |
2592454 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2592453 |
gtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
2592354 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2592353 |
tctatcaccacacagtgtatcataaccatcttttaagctt |
2592314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2440607 - 2440368
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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|
| T |
2440607 |
ttttgaatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagcatcttggactaatttctctgattgactatcaa |
2440508 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2440507 |
gtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
2440408 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2440407 |
tctatcaccacacagtgtatcataaccatcttttaagctt |
2440368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2596276 - 2596515
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
2596276 |
ttttgtatagtactcaacctatgtgccacaaccacacttgtccttccaaccataaccctttctaaagtatcttggactaatttctctgattgactatcaa |
2596375 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2596376 |
gtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
2596475 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2596476 |
tctatcaccacacagtgtatcataaccatcttttaagctt |
2596515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2568717 - 2568956
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| ||||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
2568717 |
ttttgtatagtactcaacctatgtgccacaaccacacttgtccttccaaccataaccctttctaaagcatcttggactaatttctcagattgactatcaa |
2568816 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568817 |
gtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
2568916 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2568917 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
2568956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2672092 - 2672331
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||| ||||| ||||||||||| ||||||||||||| |
|
|
| T |
2672092 |
ttttgtatagtactcaacctatgtgctacaaccacacttgtccttccaaccataaccctttctaaagcatcttggactaatttctcagattgactatcaa |
2672191 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2672192 |
gtgcacttgttgcttcatccaaaagcaacacctctggattcttcaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
2672291 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2672292 |
tctgtcaccacacaaagtatcataaccatcttttaagctt |
2672331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2640932 - 2641171
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || ||||||||||||||||| || ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
2640932 |
ttttgtatagtactcaacctatgtgcgacaactacacttgtccttccaaccataactctttctaaagcatcttgcactaatttctctgattgactatcaa |
2641031 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2641032 |
gtgcacttgttgcttcatccaaaagtaacacctttggattcttcaatatagctctagctattgcaatcctttgtttttgaccaccactaagttgaactcc |
2641131 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2641132 |
tctatcaccacacaatgtatcataaccatcttgtaagctt |
2641171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2451329 - 2451090
Alignment:
| Q |
1 |
ttttggatagtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaa |
100 |
Q |
| |
|
||||| ||||||||||||||||| || |||||||| ||||| ||||||| ||| ||| ||||||||| ||||| ||||| ||||||||||||||||||| |
|
|
| T |
2451329 |
ttttgtatagtactcaacctatgagccacaaccacacttgttcttccaatcataaccctttctaaagcatcttgcactaacttctctgattgactatcaa |
2451230 |
T |
|
| Q |
101 |
gtgcacttgttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| |
|
|
| T |
2451229 |
gtgcacttgttgcttcatccaaaagcaacacctttggattcttcaatatagctctagctattgcaatcctttgcttttgaccaccagaaagttgaactcc |
2451130 |
T |
|
| Q |
201 |
tctatcaccacacaatgtatcataaccatcttttaagctt |
240 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
2451129 |
tctatcaccacacaatgtctcataaccatattttaagctt |
2451090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 10 - 233
Target Start/End: Original strand, 17870137 - 17870360
Alignment:
| Q |
10 |
gtactcaacctatgtgctacaaccacgcttgtccttccaaccatgaccttttctaaagtgtcttgtactaatttctctgattgactatcaagtgcacttg |
109 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| ||||| | || | ||||| |||| || ||||| | | ||||||||||||||| |
|
|
| T |
17870137 |
gtactcaacctatgtgctacaaccacactagtccttccaaccattaccttattcaatgcatcttgcactaccttttctgaattattatcaagtgcacttg |
17870236 |
T |
|
| Q |
110 |
ttgcttcatccaaaagcaacacatctggattctttaatatagctctagctattgcaattctttgtttttgaccaccactaagttgaactcctctatcacc |
209 |
Q |
| |
|
|||||||||| | ||||||||| | ||||||||| || || |||||||||||||| || ||||||||||| || || |||||| |||||| | || || |
|
|
| T |
17870237 |
ttgcttcatctagaagcaacacctttggattcttcaacatggctctagctattgctatcctttgtttttgcccccctgaaagttgcactcctttgtcccc |
17870336 |
T |
|
| Q |
210 |
acacaatgtatcataaccatcttt |
233 |
Q |
| |
|
|||| |||| ||||| |||||||| |
|
|
| T |
17870337 |
acaccatgtctcatacccatcttt |
17870360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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