View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_81 (Length: 239)

Name: NF4513_low_81
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_81
NF4513_low_81
[»] chr4 (3 HSPs)
chr4 (10-239)||(34763751-34763980)
chr4 (10-239)||(34780132-34780361)
chr4 (10-239)||(34755775-34756004)


Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 34763980 - 34763751
Alignment:
Q  10 catcatcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgccta 109  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34763980 catcttcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgccta 34763881  T
Q  110 ccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34763880 ccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtct 34763781  T
Q  210 tacctatgataattctgttgctatggttcc 239  Q
    ||||||||| || |||||||||||||||||    
T  34763780 tacctatgaaaaatctgttgctatggttcc 34763751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 34780132 - 34780361
Alignment:
Q  10 catcatcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgccta 109  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34780132 catcttcaccttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggccctttgtacactctttactttggttccatgccta 34780231  T
Q  110 ccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34780232 ccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtct 34780331  T
Q  210 tacctatgataattctgttgctatggttcc 239  Q
    ||||||||||||||||||||||||||||||    
T  34780332 tacctatgataattctgttgctatggttcc 34780361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 10 - 239
Target Start/End: Complemental strand, 34756004 - 34755775
Alignment:
Q  10 catcatcatcttttggataacccacttcttcaccacactcttatcaagttaggaaagcgttatggacctttgtacactctttactttggttccatgccta 109  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||    
T  34756004 catcttcaccttttggataaccctcttcttcaccacactcttatcaagttaggagaacgttatggccctttgtacactctttactttggttccatgccta 34755905  T
Q  110 ccgttgttgcatccactcctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaagattccaaacctctgctattagtcgtct 209  Q
    || ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34755904 ccattgttgcctcaacccctgacttgtttaaacttttccttcaaacccatgaagctacttcctttaacacaaggttccaaacctctgctattagtcgtct 34755805  T
Q  210 tacctatgataattctgttgctatggttcc 239  Q
    ||||||||| || |||||||||||||||||    
T  34755804 tacctatgacaactctgttgctatggttcc 34755775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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