View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_low_82 (Length: 238)
Name: NF4513_low_82
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_82 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 38 - 221
Target Start/End: Complemental strand, 282632 - 282448
Alignment:
| Q |
38 |
ttatggttcttgagcttaggcgtaaacatgaagctaagatatcattattcaagaataaagacatggcaa-tggcaataaattttataagaaaaattgtgc |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
282632 |
ttatggttcttgagcttaggcgtaaacatgaagctaagatatcattattcaagaataaagacatggcaaatggcaataaattttataagaaaaattgtgc |
282533 |
T |
|
| Q |
137 |
aaatattttgagtaaaaaaccgctatattgtaacttttttgagttgcaaatgcttatttatgttcaacttaagtgaagaatcaag |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
282532 |
aaatattttgagtaaaaaaccgctatattgtaacttttttgagtcgcaaatgcttatttatgttcaacttaagtgaagaatcaag |
282448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 39 - 221
Target Start/End: Complemental strand, 12739349 - 12739167
Alignment:
| Q |
39 |
tatggttcttgagcttaggcgtaaacatgaagctaagatatcattattcaagaataaagacatggcaatggcaataaattttataagaaaaattgtgcaa |
138 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| || ||||||||||||||||||||||| |||||||||||| || |
|
|
| T |
12739349 |
tatggttcttgagattaggcgtaaacatgaagttaagatatcatcattcaagaataatgatatggcaatggcaataaattttattagaaaaattgtgaaa |
12739250 |
T |
|
| Q |
139 |
atattttgagtaaaaaaccgctatattgtaacttttttgagttgcaaatgcttatttatgttcaacttaagtgaagaatcaag |
221 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12739249 |
atattttgagtaaaaagccgctatattgtaacttttttgagttgcaaatgcttatttatgttcaacttaagtgaagaatcaag |
12739167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 217
Target Start/End: Original strand, 22986573 - 22986701
Alignment:
| Q |
91 |
aataaagacatggcaatggcaataaattttataagaaaaattgtgcaaatattttgagtaaaaaacc--gctatattgtaacttttttgagttgcaaatg |
188 |
Q |
| |
|
|||||||| |||||||| ||| | | ||||| ||| |||||||||| || |||||||||||||| |||||||| |||| |||||| ||||||||| |
|
|
| T |
22986573 |
aataaagatatggcaatagcattgtagtttatgagagaaattgtgcatatcttttgagtaaaaaaaaaagctatattataacatttttgggttgcaaatc |
22986672 |
T |
|
| Q |
189 |
cttatttatgttcaacttaagtgaagaat |
217 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
22986673 |
ttgatttatgttcaacttaagtggagaat |
22986701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 37780391 - 37780262
Alignment:
| Q |
91 |
aataaagacatggcaatggcaataaattttataagaaaaattgtgcaaatattttgagtaaaaaacc---gctatattgtaacttttttgagttgcaaat |
187 |
Q |
| |
|
|||||||| |||||||| ||| | | ||||| ||| |||||||||| || |||||||||||||| |||||||| |||| |||||| |||||||| |
|
|
| T |
37780391 |
aataaagatatggcaatagcattgtagtttatgagagaaattgtgcatatcttttgagtaaaaaaaaaaagctatattataacatttttggattgcaaat |
37780292 |
T |
|
| Q |
188 |
gcttatttatgttcaacttaagtgaagaat |
217 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
37780291 |
cttgatttatgttcaacttaagtggagaat |
37780262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 32210513 - 32210385
Alignment:
| Q |
91 |
aataaagacatggcaatggcaataaattttataagaaaaattgtgcaaatattttgagtaaaaaaccg--ctatattgtaacttttttgagttgcaaatg |
188 |
Q |
| |
|
|||||||| |||||||| ||| | | ||||| ||| |||||||||| || |||||||||||||| ||||||| |||| |||||| ||||||||| |
|
|
| T |
32210513 |
aataaagatatggcaatagcattgtagtttatgagagaaattgtgcatatcttttgagtaaaaaaaaaaactatattataacatttttgggttgcaaatt |
32210414 |
T |
|
| Q |
189 |
cttatttatgttcaacttaagtgaagaat |
217 |
Q |
| |
|
| |||||||||||||||||||| ||||| |
|
|
| T |
32210413 |
ttgatttatgttcaacttaagtggagaat |
32210385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 177
Target Start/End: Original strand, 53691982 - 53692059
Alignment:
| Q |
100 |
atggcaatggcaataaattttataagaaaaattgtgcaaatattttgagtaaaaaaccgctatattgtaacttttttg |
177 |
Q |
| |
|
||||||||| |||| ||||||| ||| |||||||||| || |||||||||||||| |||||||| |||| |||||| |
|
|
| T |
53691982 |
atggcaatgacaatgtattttatgagagaaattgtgcatattttttgagtaaaaaaaagctatattataacatttttg |
53692059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University