View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_88 (Length: 237)
Name: NF4513_low_88
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_88 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 3 - 237
Target Start/End: Original strand, 41011778 - 41012012
Alignment:
| Q |
3 |
atcatcatcatcacgtggatagtccattgtctagtgaaagtagtatgatcatagaaggtatgagcagagtttgtccatatagcccagaagaaaagaaagt |
102 |
Q |
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| T |
41011778 |
atcatcatcatcacgtggatagtccattgtctagtgaaagtagtatgatcatagaaggtatgagcagagtttgtccatatagcccagaagaaaagaaagt |
41011877 |
T |
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| Q |
103 |
gagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaactcttgtacaaaatacacacatggcacatctaaattt |
202 |
Q |
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| T |
41011878 |
gagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaactcttgtacaaaatacacacatggcacatctaaattt |
41011977 |
T |
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| Q |
203 |
tgttacatttgtctcattttactagtattctatgt |
237 |
Q |
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| T |
41011978 |
tgttacatttgtctcattttactagtattctatgt |
41012012 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 22890673 - 22890755
Alignment:
| Q |
83 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
165 |
Q |
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| T |
22890673 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
22890755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 165
Target Start/End: Original strand, 22942337 - 22942419
Alignment:
| Q |
83 |
agcccagaagaaaagaaagtgagaattgaaagatacagaataaagaggaatcagaggaactttaacaagaaaattaaggttaa |
165 |
Q |
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|||||||| |||||||| ||||| ||||| ||||| |||| |||| ||||||||||||| || ||||||||||||||||| |
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| T |
22942337 |
agcccagaggaaaagaaggtgaggattgagagatatagaagcaagaaaaatcagaggaactacaataagaaaattaaggttaa |
22942419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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