View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4513_low_93 (Length: 223)
Name: NF4513_low_93
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_93 |
 | |
|
| [»] scaffold0236 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 27668173 - 27668321
Alignment:
| Q |
51 |
taaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaagacca |
150 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27668173 |
taaatcaacggcttcagtattgaggttagtgatgttgacggagtcaagataaatgatttgggtgtggagttgaaaggcgaggatcaaaaggctaagacca |
27668272 |
T |
|
| Q |
151 |
tttacgttgtctacgagaaagaaaatgtaaaccaacatggttaaagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27668273 |
tttacgttgtctacgagaaagaaaatggaaaccaacatggttaaagcaa |
27668321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 27668909 - 27668773
Alignment:
| Q |
4 |
tcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagataaa |
103 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| | |||| ||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
27668909 |
tcattgttgtgagtatgaaatatgaaccataaatcaaatatggccgttaaatcaagggcttcggtattgaggttagtgatgttggaggagtcaaggtaaa |
27668810 |
T |
|
| Q |
104 |
tgatttgggtgtggagttgaaaggcgaggatcaaaag |
140 |
Q |
| |
|
|| || | |||||||||||||||| | | |||||||| |
|
|
| T |
27668809 |
tggttggagtgtggagttgaaaggtgggtatcaaaag |
27668773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 27673687 - 27673541
Alignment:
| Q |
1 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||||||| |||| |||| | || | |||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
27673687 |
tcatcattgttgggagtatgaaaaatgaacgatgaatcaaacgtggctattaagttaagggcttcggtattgaggttagttatgttgacggagtcaagat |
27673588 |
T |
|
| Q |
101 |
aaatgatttgggtgtggagttgaaaggcgaggatcaaaaggccaaga |
147 |
Q |
| |
|
||||| || |||||| ||||||||||| | | |||||||||| |||| |
|
|
| T |
27673587 |
aaatgcttggggtgttgagttgaaaggtgggtatcaaaaggctaaga |
27673541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27668141 - 27668180
Alignment:
| Q |
1 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27668141 |
tcatcattgttggaagtatgaaaaatgaaccataaatcaa |
27668180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 100
Target Start/End: Complemental strand, 9033 - 8954
Alignment:
| Q |
21 |
aaaaatgaaccataaatcaaacatggccgttaaatcaacgacttcagtattgaggttagtgatgttgacggagtcaagat |
100 |
Q |
| |
|
|||||| ||| ||||||||||| |||||||||||| |||| ||| ||||| ||||| |||||||| ||||| ||||||| |
|
|
| T |
9033 |
aaaaataaacgataaatcaaacgtggccgttaaattaacggctttggtattaaggttggtgatgttaacggaatcaagat |
8954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University