View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4513_low_95 (Length: 218)
Name: NF4513_low_95
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4513_low_95 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 10239934 - 10239742
Alignment:
| Q |
9 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
108 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239934 |
acatcatcaatctcagcactaatactcaacacactcgatgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10239835 |
T |
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| Q |
109 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgttt |
201 |
Q |
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| T |
10239834 |
tgtcccaaaactttgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgttt |
10239742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 10254684 - 10254863
Alignment:
| Q |
22 |
cagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
121 |
Q |
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| T |
10254684 |
cagcactactattcaacacattcgacgacatcatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttttgtcccaaaactt |
10254783 |
T |
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| Q |
122 |
tgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgttt |
201 |
Q |
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| T |
10254784 |
tgcaccagtccttgacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtgttt |
10254863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 10231154 - 10230965
Alignment:
| Q |
9 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacatcttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10231154 |
acatcatcaatatcagcactaatactcaacacactcgatgacattatcaacaccttcatagacccaccaataaaaccatccgtagatccaagacatgttt |
10231055 |
T |
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| Q |
109 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgcaaagtcattaaaggcacacttccaccgtcacttaacggtg |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||| ||||| || ||||||||| |||||| |
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| T |
10231054 |
tgtcccaaaactttgcaccagtcctagacgaactccctccaacacaatgtgtaatcatcaaaggtacactcccgccgtcactttacggtg |
10230965 |
T |
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