View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4513_low_99 (Length: 203)

Name: NF4513_low_99
Description: NF4513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4513_low_99
NF4513_low_99
[»] chr5 (1 HSPs)
chr5 (18-89)||(567574-567641)
[»] chr7 (1 HSPs)
chr7 (106-134)||(43753071-43753099)
[»] chr6 (3 HSPs)
chr6 (106-134)||(6785007-6785035)
chr6 (106-134)||(12613117-12613145)
chr6 (106-134)||(12626453-12626481)
[»] chr4 (3 HSPs)
chr4 (106-134)||(33808077-33808105)
chr4 (106-134)||(44490027-44490055)
chr4 (106-134)||(48552013-48552041)
[»] chr3 (1 HSPs)
chr3 (106-134)||(47329470-47329498)
[»] chr2 (2 HSPs)
chr2 (106-134)||(3430531-3430559)
chr2 (106-134)||(17484456-17484484)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 567574 - 567641
Alignment:
Q  18 caatcaaacataacctttaattttaattaattattcaacacgaagattttcctacctaaatgaatccaataa 89  Q
    |||||||||||||||||||||||||||||    || |||||||||||||||||||||||| |||||||||||    
T  567574 caatcaaacataacctttaattttaatta----ttgaacacgaagattttcctacctaaaagaatccaataa 567641  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 43753099 - 43753071
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  43753099 aggtcaaatgcatctaaaggttctttaag 43753071  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 6785007 - 6785035
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  6785007 aggtcaaatgcatctaaaggttctttaag 6785035  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 12613145 - 12613117
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  12613145 aggtcaaatgcatctaaaggttctttaag 12613117  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 12626453 - 12626481
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  12626453 aggtcaaatgcatctaaaggttctttaag 12626481  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 33808105 - 33808077
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  33808105 aggtcaaatgcatctaaaggttctttaag 33808077  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 44490027 - 44490055
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  44490027 aggtcaaatgcatctaaaggttctttaag 44490055  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 48552041 - 48552013
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  48552041 aggtcaaatgcatctaaaggttctttaag 48552013  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 47329498 - 47329470
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  47329498 aggtcaaatgcatctaaaggttctttaag 47329470  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 3430531 - 3430559
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  3430531 aggtcaaatgcatctaaaggttctttaag 3430559  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 17484456 - 17484484
Alignment:
Q  106 aggtcaaatgcatctaaaggttctttaag 134  Q
    |||||||||||||||||||||||||||||    
T  17484456 aggtcaaatgcatctaaaggttctttaag 17484484  T

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