View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514-Insertion-1 (Length: 958)
Name: NF4514-Insertion-1
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 562; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 8 - 773
Target Start/End: Original strand, 47457022 - 47457821
Alignment:
| Q |
8 |
ttaagaacttagctcatttacatattatcatgcattaagtataatctaatgatttggaaatcctatctatttttatataggatttgcaaatt-------- |
99 |
Q |
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| T |
47457022 |
ttaagaacttagctcatttacatattatcatgcattaagtataatctaatgatttggaaatcctatctatttttatataggatttgcaaattatttagtt |
47457121 |
T |
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| Q |
100 |
-----------attttctattctgtagtttttaagtgttccaatttccaaacaagatgatttgtgttgcaaaatttatgtctcatgctgcataaaacatt |
188 |
Q |
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| T |
47457122 |
tctgaataattattttctattctgtagtttttaagtgttccaatttccaaacaagatgatttgtgttgcaaaatttatgtctcatgttgcataaaacatt |
47457221 |
T |
|
| Q |
189 |
gtcaagtatgcagttgtaggacttttcagtttttggtcaaaataaaatattactagcttatacatccttttgtagaccacgcaatgcttgtatgaatggg |
288 |
Q |
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| T |
47457222 |
gtcaagtatgcagttgtaggactttcaagtttttggtcaaaataaaatattactagcttatacatccttttgtagaccacgcaatgcttgtatgaatggg |
47457321 |
T |
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| Q |
289 |
aatgaccaatgcaatctctagagaagttttgatcaataacactattggattattggttatacttatatgtgttaacatgtcatgaaaaattttaaatcac |
388 |
Q |
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| T |
47457322 |
aatgaccaatgcaatctctagagaagttttgatcaataacactattggattattggttatacttatatgtgttaacatgtcatgaaaaattttaaattac |
47457421 |
T |
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| Q |
389 |
gatttaagtcaagcaaagtagtgtctcttacatcattttctaacatgagtagcactaaatatttactcaactaaaattgaatcaaaaattagtagaggat |
488 |
Q |
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| T |
47457422 |
gatttaagtcaagcaaagtagtgtctcttacatcattttctaacatgagtagcactaaatatttactcaactaaaattgaatcaaaaattagtagaggat |
47457521 |
T |
|
| Q |
489 |
acccttttattagctagtagaaccact---acnnnnnnnnnnnnnnnctaatagaacaatacacctattaacttcacaaaacacatgacaaatcgaagtt |
585 |
Q |
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| T |
47457522 |
acccttttattagccagtagaactactaaaaaaaaaaaaaaaaaaaactaatagaacaacacacctattaacttcacgaaacacatgataaatcgaagtt |
47457621 |
T |
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| Q |
586 |
ctccaactaactaagaagaaagtgaagaagagaaacaactacttgaaaaataga------------ttaaacaaatttaattacaagacgtagagcccat |
673 |
Q |
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| T |
47457622 |
ctccaaccaactaagaagaaagtgaagaagagaaacaactatttgaaaaatagattgaacaaattgttaagcaaatttaattacaagacgtagagcctat |
47457721 |
T |
|
| Q |
674 |
aattctttccaaatagttaaacaagctctgaccgacagtataatcttctaataattttcctagaatctctaataatcaaaggtcaacaagtagcaatagc |
773 |
Q |
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| T |
47457722 |
aattctttctaaatagttaaacaagctctgaccgatggtataatcttctaataattttcctagagtctctaataatcaaaggtcaataagtagcaatagc |
47457821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 876 - 954
Target Start/End: Original strand, 47457915 - 47457990
Alignment:
| Q |
876 |
ctctaatcaaacttaaacaattatcaaacacttaattggatatttttatttcgtttgactcttattatattcaatcaaa |
954 |
Q |
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| T |
47457915 |
ctctaatcaaacttaaacaattatcaaacacttaattggatatttttatttcgtttgac---tattatattcaatcaaa |
47457990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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