View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4514-Insertion-2 (Length: 889)

Name: NF4514-Insertion-2
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4514-Insertion-2
NF4514-Insertion-2
[»] chr8 (7 HSPs)
chr8 (29-427)||(19448957-19449371)
chr8 (29-427)||(19531705-19532119)
chr8 (581-889)||(45355006-45355314)
chr8 (26-386)||(18767403-18767780)
chr8 (29-212)||(27810368-27810552)
chr8 (529-585)||(45355452-45355508)
chr8 (29-99)||(5529240-5529309)
[»] scaffold0069 (2 HSPs)
scaffold0069 (29-427)||(39875-40288)
scaffold0069 (426-513)||(39676-39763)
[»] chr7 (5 HSPs)
chr7 (29-427)||(9241661-9242074)
chr7 (426-585)||(9241390-9241549)
chr7 (32-211)||(19747076-19747254)
chr7 (32-211)||(10022543-10022723)
chr7 (508-571)||(24511285-24511348)
[»] chr3 (6 HSPs)
chr3 (581-889)||(13846890-13847198)
chr3 (581-889)||(2551064-2551372)
chr3 (30-209)||(2942623-2942803)
chr3 (529-585)||(2550870-2550926)
chr3 (529-585)||(13846696-13846752)
chr3 (428-504)||(42450739-42450815)
[»] chr6 (8 HSPs)
chr6 (30-427)||(17718900-17719313)
chr6 (581-849)||(17718223-17718491)
chr6 (29-250)||(14668715-14668933)
chr6 (426-585)||(17718629-17718788)
chr6 (32-211)||(6684618-6684798)
chr6 (40-211)||(12592304-12592476)
chr6 (848-889)||(6685285-6685326)
chr6 (167-211)||(30821737-30821781)
[»] chr4 (11 HSPs)
chr4 (581-889)||(1153161-1153469)
chr4 (29-312)||(1684267-1684548)
chr4 (29-213)||(8142823-8143006)
chr4 (581-720)||(43601165-43601304)
chr4 (529-585)||(43600971-43601027)
chr4 (123-211)||(47065519-47065607)
chr4 (309-350)||(1677684-1677725)
chr4 (275-312)||(1677739-1677776)
chr4 (317-350)||(1684212-1684245)
chr4 (349-406)||(40361031-40361086)
chr4 (123-211)||(53300880-53300968)
[»] chr1 (3 HSPs)
chr1 (581-879)||(29277648-29277946)
chr1 (29-211)||(51759215-51759398)
chr1 (506-585)||(51759948-51760027)
[»] chr5 (14 HSPs)
chr5 (29-427)||(23615751-23616148)
chr5 (29-427)||(23847147-23847544)
chr5 (581-889)||(23760698-23761009)
chr5 (581-889)||(23826159-23826470)
chr5 (30-312)||(17038056-17038339)
chr5 (581-805)||(17038934-17039158)
chr5 (426-553)||(23615512-23615639)
chr5 (426-553)||(23846908-23847035)
chr5 (794-889)||(17039177-17039272)
chr5 (487-585)||(17038698-17038796)
chr5 (349-427)||(17038496-17038574)
chr5 (512-582)||(15162744-15162814)
chr5 (551-585)||(23761147-23761181)
chr5 (551-585)||(23826608-23826642)
[»] chr2 (6 HSPs)
chr2 (581-889)||(15514869-15515172)
chr2 (32-204)||(15514158-15514331)
chr2 (506-582)||(15514654-15514730)
chr2 (123-211)||(30267530-30267618)
chr2 (123-208)||(44921673-44921758)
chr2 (74-186)||(15539030-15539143)
[»] scaffold0684 (1 HSPs)
scaffold0684 (30-161)||(206-336)
[»] scaffold0105 (1 HSPs)
scaffold0105 (123-211)||(104-192)
[»] scaffold1808 (1 HSPs)
scaffold1808 (132-211)||(1008-1087)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-169; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 29 - 427
Target Start/End: Original strand, 19448957 - 19449371
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19448957 cattgttcctattcatccaactatattatcagccttccattttgtattatgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 19449056  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  19449057 ttctctttcttcatcaaatcttgcatccttt--tacaatattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaaagtt 19449154  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatg-tccaacttttcatagccatgcag-----------------ta 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||                 ||    
T  19449155 cttaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgttccaatttttcatagccatgcagtaatctacaagaaacttta 19449254  T
Q  311 ataaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19449255 ataaccaaaaatgcataattccatatcgtatatattattaaccattgctgaaacaagtcaatagcaaggaactccaatacaaccaataacatctatatga 19449354  T
Q  411 ttgtgaatttccaaatc 427  Q
    |||||||||||||||||    
T  19449355 ttgtgaatttccaaatc 19449371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 19532119 - 19531705
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19532119 cattgttcctattcatccaactatattatcagccttccattttgtattatgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 19532020  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  19532019 ttctctttcttcatcaaatcttgcatccttt--tacaatattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaaagtt 19531922  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatg-tccaacttttcatagccatgcag-----------------ta 310  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||                 ||    
T  19531921 cttaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgttccaatttttcatagccatgcagtaatctacaagaaacttta 19531822  T
Q  311 ataaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatga 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19531821 ataaccaaaaatgcataattccatatcgtatatattattaaccattgctgaaacaagtcaatagcaaggaactccaatacaaccaataacatctatatga 19531722  T
Q  411 ttgtgaatttccaaatc 427  Q
    |||||||||||||||||    
T  19531721 ttgtgaatttccaaatc 19531705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 581 - 889
Target Start/End: Complemental strand, 45355314 - 45355006
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  45355314 aataatataatcaattttaaaagacaaatcttacttaagttgatcatattgcattgcatgtgttgttatatactagaggacttacttcattattcatgga 45355215  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  45355214 gttccatgctttaatagccattttattaacaccagaatttcgatctacttctttaaaatttttgccaaacttatccctgaaatatacatttttaacttaa 45355115  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45355114 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 45355015  T
Q  881 caactttga 889  Q
    |||||||||    
T  45355014 caactttga 45355006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 26 - 386
Target Start/End: Original strand, 18767403 - 18767780
Alignment:
Q  26 cttcattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattt 125  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18767403 cttcattgttcctattcatccaaccatattatcagcctttcattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattt 18767502  T
Q  126 tccttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaa 225  Q
    ||||||||||||||||||||||||| ||||||||  |||| |||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  18767503 tccttctctttcttcatcaaatcttgcatccttt--tacagtattgaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaaa 18767600  T
Q  226 gttctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcag----------------- 308  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||                     
T  18767601 gttcttaaacatatcagttcttaaacaatataatgaaatacaacaaaacaaggatgaatgtccaatttttcatagccatgcagtaatccacgagaaactt 18767700  T
Q  309 taataaccaaaaatgcataattccatatcg--tatatattattaaccattcctgaaacaagtcaatagcaaggaactcca 386  Q
    ||||||||||||||| ||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||    
T  18767701 taataaccaaaaatgaataattccatatcgtatatatattattaaccattgctgaaacaagtcaatagcaaggaactcca 18767780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 27810368 - 27810552
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||    
T  27810368 cattgttcttattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgctccaagttgttgacgctctacaaatatattttcc 27810467  T
Q  129 ttctctttcttcatcaaatctt---ccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgcta 212  Q
    || ||||| ||| || ||||||    ||||||||  |||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  27810468 ttgtcttttttcttctaatcttttcacatccttt--tacagtattcaactttttgtcctgccaaaataaacaatataatgcatgcta 27810552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 529 - 585
Target Start/End: Complemental strand, 45355508 - 45355452
Alignment:
Q  529 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45355508 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcataaaataa 45355452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Original strand, 5529240 - 5529309
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaa 99  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||    
T  5529240 cattgttcttattcatccaaccatattatcagccttccattttgttttctacttga-tctttttgctccaa 5529309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 40288 - 39875
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  40288 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttcc 40189  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  40188 ttctctttcttcatcaaatcttgcatcctttta--caatattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaaagtt 40091  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcagtaat---------------- 312  Q
    || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||                    
T  40090 cttaagcatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgcccaatttttcatagccatgcagtaatccacaagaaactttaa 39991  T
Q  313 -aaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatgat 411  Q
     |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  39990 aaaccaaaaatgcataattccatatcgtatatattattaaccattgctaaaacaagtcaatagcaaggaactccaatgcaaccaataacatctatatgat 39891  T
Q  412 tgtgaatttccaaatc 427  Q
    ||||||||||||||||    
T  39890 tgtgaatttccaaatc 39875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 426 - 513
Target Start/End: Complemental strand, 39763 - 39676
Alignment:
Q  426 tcgaacgactctgaaactcgagcaaaaggaggaatcacaagaattcatgaaacaatgttcagaaatcagaccttataatatgaagcat 513  Q
    ||||| ||||||||||||| |||||||||||||||||||  ||||||| ||||||||||||||||| |||||||||||||| ||||||    
T  39763 tcgaatgactctgaaactcaagcaaaaggaggaatcacagtaattcatcaaacaatgttcagaaattagaccttataatataaagcat 39676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 9242074 - 9241661
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9242074 cattgttcctattcatccaaccatattatcagccttcaattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttcc 9241975  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  9241974 ttctctttcttcatcaaatcttgcatcctttta--cagtattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaaagtt 9241877  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcag-----------------taa 311  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                 |||    
T  9241876 cttaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaatttttcatagccatgcagtaatccacaagaaactttaa 9241777  T
Q  312 taaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatgat 411  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  9241776 taaccaaaaatgcataatttcatatcgtatatattattaaccattgctgaaacaagtcaatagcaaggaactccgatacaaccaataacatctatatgat 9241677  T
Q  412 tgtgaatttccaaatc 427  Q
    ||||||||||||||||    
T  9241676 tgtgaatttccaaatc 9241661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 426 - 585
Target Start/End: Complemental strand, 9241549 - 9241390
Alignment:
Q  426 tcgaacgactctgaaactcgagcaaaaggaggaatcacaagaattcatgaaacaatgttcagaaatcagaccttataatatgaagcattccaccaatccc 525  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9241549 tcgaatgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcagaccttataatatgaagcattccaccaatccc 9241450  T
Q  526 ggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9241449 ggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcataaaataa 9241390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 19747076 - 19747254
Alignment:
Q  32 tgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttc 131  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  19747076 tgttcttattcttccaaccatattatcagccttccattttgttttct--ttgattctttttgctccaagttgttgacactctacaaatttcttttccttc 19747173  T
Q  132 tctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    ||||||||| ||||||||||   |||||||| ||  | ||||||||||||||| | |||||| ||||||||||||||||||||    
T  19747174 tctttcttcttcaaatcttctcgcatcctttaat--agtattcaactttttgttcagccaaaataaacaatataatgcatgct 19747254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 10022543 - 10022723
Alignment:
Q  32 tgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttc 131  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||| |||||||||||| |||| |||     
T  10022543 tgttcttattcttccaaccatattatcagccttccattttgttttctgcttgattctttttgctctaagttgtggacgctctacaaatttctttttcttg 10022642  T
Q  132 tctttcttcatcaaatctt---ccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    ||||||||| |||||||||    ||||||||  |||| |||||||||||||||  | ||||| ||||||||||||||||||||    
T  10022643 tctttcttcttcaaatcttttcgcatccttt--tacagtattcaactttttgttttaccaaaataaacaatataatgcatgct 10022723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 508 - 571
Target Start/End: Original strand, 24511285 - 24511348
Alignment:
Q  508 aagcattccaccaatcccggggtcagcctattcaatcaaacacaccaaaagaataagcaaagat 571  Q
    |||||||||||||||||||| | ||||||||||||  |||  ||||||||||||||||||||||    
T  24511285 aagcattccaccaatcccggagccagcctattcaaagaaatgcaccaaaagaataagcaaagat 24511348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 581 - 889
Target Start/End: Original strand, 13846890 - 13847198
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13846890 aataatataatcaattttaaaagacaaatcttacttaagttgatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 13846989  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  13846990 gttccatgctttaatagccattttattaacaccagaattttgatctacttctttaaaatttttgccaaacttatccctgaaatatacatttttaacttaa 13847089  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13847090 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 13847189  T
Q  881 caactttga 889  Q
    |||||||||    
T  13847190 caactttga 13847198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 581 - 889
Target Start/End: Original strand, 2551064 - 2551372
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2551064 aataatataatcaattttaaaagacaaatcttacttaagttgatcatattgcattgcatgtgttgttatatactagaggacttacttcattactcatgga 2551163  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  2551164 gttccatgctttaatagccattttattaacaccagaatttcgatctacttctttaaaatttttgccaaacttatccctgaaatatacatttttaacttaa 2551263  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 880  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2551264 taataaataacgcaaaactaaaaaatatattaagcaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 2551363  T
Q  881 caactttga 889  Q
    |||||||||    
T  2551364 caactttga 2551372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 30 - 209
Target Start/End: Complemental strand, 2942803 - 2942623
Alignment:
Q  30 attgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcct 129  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||||||||||||||||||    
T  2942803 attgttcttattcatccaatcatattatcagccttccattttgttttctgcttgattatttttgctccaagttgttgacgctctacaaatttattttcct 2942704  T
Q  130 tctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatg 209  Q
    | ||||||||| ||||||| ||   ||||||||  ||||  |||||||||||| |||||||||| ||||||||||||||||||    
T  2942703 tgtctttcttcttcaaatcctctcgcatccttt--tacataattcaactttttatcctgccaaaataaacaatataatgcatg 2942623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 529 - 585
Target Start/End: Original strand, 2550870 - 2550926
Alignment:
Q  529 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2550870 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcataaaataa 2550926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 529 - 585
Target Start/End: Original strand, 13846696 - 13846752
Alignment:
Q  529 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13846696 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcataaaataa 13846752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 428 - 504
Target Start/End: Complemental strand, 42450815 - 42450739
Alignment:
Q  428 gaacgactctgaaactcgagcaaaaggaggaatcacaagaattcatgaaacaatgttcagaaatcagaccttataat 504  Q
    |||||| ||| |||||| |||||||| || |||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  42450815 gaacgaatctaaaactcaagcaaaagtagaaatctcaagaattcatcaaacaatattcagaaatcagaccttataat 42450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 427
Target Start/End: Complemental strand, 17719313 - 17718900
Alignment:
Q  30 attgttcctattcatccaaccatattatcagccttccattttgttttctgctt-gattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  17719313 attgttcatattcatccaaccatattatcagccttccattttgttttctgctttgattctttttgttccaagttgttgacactctacaaatttattttcc 17719214  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||||  || |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  17719213 ttctctttcttcatcaaatcttgcatcctttta--cagtattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaaagtt 17719116  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcag-----------------taa 311  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||                 |||    
T  17719115 cttaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaatttttcatagccatgcagtaatccacaagaaactttaa 17719016  T
Q  312 taaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatgat 411  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||  | |||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  17719015 taaccaaaaatgcataatttcatatcgtatatattatttaccattggtaaaacaagtcaatagcaaggaactctaatacaaccaataacatctatatgat 17718916  T
Q  412 tgtgaatttccaaatc 427  Q
    ||||||||||||||||    
T  17718915 tgtgaatttccaaatc 17718900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 581 - 849
Target Start/End: Complemental strand, 17718491 - 17718223
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17718491 aataatataatcaattttaaaagacaaatattacttaagttgatcatattgcattgcatgtgttgttatatactagaggacttacttcattactcatgga 17718392  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  17718391 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatatatttttaacttaa 17718292  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactc 849  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17718291 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaggaactc 17718223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 29 - 250
Target Start/End: Complemental strand, 14668933 - 14668715
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  14668933 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactcta-aaatttattttcc 14668835  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| ||||| ||||||||||||||||||||||  ||||| |||||||    
T  14668834 ttctctttcttcatcaaatcttgcatccttt--tacaatattcaactttttgtcctaccaaaataaacaatataatgcatgctagccgatattaaaagtt 14668737  T
Q  229 ctcaaacatatcagttcttaaa 250  Q
    || |||||||||||||||||||    
T  14668736 cttaaacatatcagttcttaaa 14668715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 426 - 585
Target Start/End: Complemental strand, 17718788 - 17718629
Alignment:
Q  426 tcgaacgactctgaaactcgagcaaaaggaggaatcacaagaattcatgaaacaatgttcagaaatcagaccttataatatgaagcattccaccaatccc 525  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  17718788 tcgaacgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcaaaccttataatatgaagcattccaccaatccc 17718689  T
Q  526 ggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17718688 aaggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 17718629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 6684618 - 6684798
Alignment:
Q  32 tgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttc 131  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||      
T  6684618 tgttcttattcatccaaccatattatcagccgtccattttgttttctgcttgattatttttgctccaagttgttgacactctacaaatttattttcctcg 6684717  T
Q  132 tctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    ||||||||| ||||||||||   ||||||||  |||| |||||||||||||||||||||||| || |||||||||||||||||    
T  6684718 tctttcttcttcaaatcttcttgcatccttt--tacagtattcaactttttgtcctgccaaaatagacaatataatgcatgct 6684798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 40 - 211
Target Start/End: Original strand, 12592304 - 12592476
Alignment:
Q  40 ttcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttctctttctt 139  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| | |||||||  ||||||||||||||||||||| ||||||||    
T  12592304 ttcatccaaccatattatcagccttccattttgttttccgcttgattctttttgctcctagttgttgatgctctacaaatttattttccttgtctttctt 12592403  T
Q  140 catcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    | ||||||||||   ||||||||  |||| |||||||||||||||||||||||| ||||||||| ||||||||||    
T  12592404 cttcaaatcttctcgcatccttt--tacagtattcaactttttgtcctgccaaaataaacaatacaatgcatgct 12592476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 848 - 889
Target Start/End: Original strand, 6685285 - 6685326
Alignment:
Q  848 tcggcggattctcaagcatatcatgatccttctcaactttga 889  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  6685285 tcggcggattctcaagcatatcatgatccttctcaactttga 6685326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 30821737 - 30821781
Alignment:
Q  167 tattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  30821737 tattcaactttttgtcctgccaaaataaacaatataatgcatgct 30821781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 581 - 889
Target Start/End: Original strand, 1153161 - 1153469
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1153161 aataatataatcaattttaaaagacaaatcttacttaagttgatcatattgcattgcatgtgttgttatatactagaggacttacttcattactcatgga 1153260  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  1153261 gttccatgctttaacagccattttattaacaccagaatttcgatctacttctttaaaatttttgccaaacttatccctgaaatatacatttttaacttaa 1153360  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1153361 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataatagagaaaaagaactcggcggattctcaagcatatcatgatccttct 1153460  T
Q  881 caactttga 889  Q
    |||||||||    
T  1153461 caactttga 1153469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 29 - 312
Target Start/End: Complemental strand, 1684548 - 1684267
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1684548 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttcc 1684449  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| |||||||||||  | |||||||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||    
T  1684448 ttctctttcttcatcaaatcttgcatccttttat--agtattcaactttttgtcctgccaaaataaacaatataatgcatgctacctgatatcaaaagtt 1684351  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcagtaat 312  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1684350 cttaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaatttttcatagccatgcagtaat 1684267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 29 - 213
Target Start/End: Complemental strand, 8143006 - 8142823
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8143006 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 8142907  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaac-tttttgtcctgccaaactaaacaatataatgcatgctag 213  Q
    |||||||||||||||||||||| ||||||||  |||  |||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  8142906 ttctctttcttcatcaaatcttgcatccttt--tacggtattcaacttttttatcctgccaaaataaacaatataatgcatgctag 8142823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 124; E-Value: 3e-63
Query Start/End: Original strand, 581 - 720
Target Start/End: Original strand, 43601165 - 43601304
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43601165 aataatataatcaattttaaaagacaaatcttacttaagttgatcatattgcattgcatgtgttgttatatactagagaacttacttcattaatcatgga 43601264  T
Q  681 gttccatgctttaacagccattttattaacaccagaattt 720  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  43601265 gttccatgctttaatagccattttattaacaccagaattt 43601304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 529 - 585
Target Start/End: Original strand, 43600971 - 43601027
Alignment:
Q  529 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43600971 gtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcataaaataa 43601027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 47065607 - 47065519
Alignment:
Q  123 ttttccttctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    |||||||| ||||||||| ||||||||||   ||||||||||||   ||||||||||||||| ||||||||  |||||||||||||||||||    
T  47065607 ttttcctt-tctttcttcttcaaatcttctcacatccttttatag--tattcaactttttgttctgccaaaacaaacaatataatgcatgct 47065519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 309 - 350
Target Start/End: Complemental strand, 1677725 - 1677684
Alignment:
Q  309 taataaccaaaaatgcataattccatatcgtatatattatta 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  1677725 taataacaaaaaatgcataattccatatcgtatatattatta 1677684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 1677776 - 1677739
Alignment:
Q  275 aaggatgaatgtccaacttttcatagccatgcagtaat 312  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1677776 aaggatgaatgtccaatttttcatagccatgcagtaat 1677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 1684245 - 1684212
Alignment:
Q  317 aaaaatgcataattccatatcgtatatattatta 350  Q
    ||||||||||||||||||||||||||||||||||    
T  1684245 aaaaatgcataattccatatcgtatatattatta 1684212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 40361086 - 40361031
Alignment:
Q  349 taaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctat 406  Q
    |||||||| |||||||||||||||| |   ||||| ||||||||||||||||||||||    
T  40361086 taaccattgctgaaacaagtcaataacc--gaactacaatacaaccagtaacatctat 40361031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 53300880 - 53300968
Alignment:
Q  123 ttttccttctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    |||||||| ||||||||| ||||||||||   | ||||||||||   ||||||||||||||| ||||||||  ||||||||||| |||||||    
T  53300880 ttttcctt-tctttcttcttcaaatcttctcacgtccttttatag--tattcaactttttgttctgccaaaacaaacaatataacgcatgct 53300968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 581 - 879
Target Start/End: Complemental strand, 29277946 - 29277648
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29277946 aataatataatcaattttaaaagacaaatattacttaagttgatcatattgcattgcatgtgttgttatatactagaggacttacttcattactcatgga 29277847  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29277846 attccatgctttaacggccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttaacttaa 29277747  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttc 879  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29277746 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttc 29277648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 113; E-Value: 9e-57
Query Start/End: Original strand, 29 - 211
Target Start/End: Original strand, 51759215 - 51759398
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    |||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||    
T  51759215 cattgttcttattcatccaaccatattatcaaccttccattttattttctgcttgattctttttgctccaagttgttgacactctacaaatttattttcc 51759314  T
Q  129 ttctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    || ||||||||| ||||||||||   ||||||||  |||| ||||||||||||| |||||||||| |||| ||||||||| |||||    
T  51759315 ttgtctttcttcttcaaatcttctcgcatccttt--tacagtattcaactttttatcctgccaaaataaataatataatggatgct 51759398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 506 - 585
Target Start/End: Original strand, 51759948 - 51760027
Alignment:
Q  506 tgaagcattccaccaatcccggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    ||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  51759948 tgaagcattccaccaattctggggtcaacctattcgatcaaacacaccaaaagaataagcaaagataattcatacaataa 51760027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 260; Significance: 1e-144; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 23616148 - 23615751
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23616148 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttcc 23616049  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||        
T  23616048 ttctctttcttcatcaaatcttgcatccttt--tacaatattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaa---- 23615955  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcag-----------------taa 311  Q
                |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||                 |||    
T  23615954 ------------agttcttaaacaatataatgcaatccaacaaaacaatgatgaatgtccaatttttcatagtcatgcagtaatccacaagaaactttaa 23615867  T
Q  312 taaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatgat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23615866 taaccaaaaatgcataattccatatcgtatatattattaaccattgctgaaacaagtcaatagcaaggaactccaatacaaccaataacatctatatgat 23615767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 23847544 - 23847147
Alignment:
Q  29 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23847544 cattgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttcc 23847445  T
Q  129 ttctctttcttcatcaaatcttccatccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaagtt 228  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||        
T  23847444 ttctctttcttcatcaaatcttgcatccttt--tacaatattcaactttttgtcctgccaaaataaacaatataatgcatgctagctgatatcaaa---- 23847351  T
Q  229 ctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcag-----------------taa 311  Q
                |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||                 |||    
T  23847350 ------------agttcttaaacaatataatgcaatccaacaaaacaatgatgaatgtccaatttttcatagtcatgcagtaatccacaagaaactttaa 23847263  T
Q  312 taaccaaaaatgcataattccatatcgtatatattattaaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatgat 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23847262 taaccaaaaatgcataattccatatcgtatatattattaaccattgctgaaacaagtcaatagcaaggaactccaatacaaccaataacatctatatgat 23847163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 581 - 889
Target Start/End: Complemental strand, 23761009 - 23760698
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  23761009 aataatataatcaattttaaaagacaaatattacttaagttgatcatattgcattgcatgcgttgttatatactagaggacttacttcattactcatgga 23760910  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  23760909 gtttcatgctttaccagccattttattaacaccagaattttgatctacttctttaaaaaatttgccaaacttatccatgaaatatacatttttaacttaa 23760810  T
Q  781 ta---ataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatcct 877  Q
    ||   ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  23760809 taataataaataacacaaaactaaaaaatatattaaagaaagaagatttaccataaaagagaaaaagaacttggcagattctcaagcatatcataatcct 23760710  T
Q  878 tctcaactttga 889  Q
    ||||||||||||    
T  23760709 tctcaactttga 23760698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 242; E-Value: 1e-133
Query Start/End: Original strand, 581 - 889
Target Start/End: Complemental strand, 23826470 - 23826159
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  23826470 aataatataatcaattttaaaagacaaatattacttaagttgatcatattgcattgcatgcgttgttatatactagaggacttacttcattactcatgga 23826371  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||    
T  23826370 gtttcatgctttaccagccattttattaacaccagaattttgatctacttctttaaaaaatttgccaaacttatccatgaaatatacatttttaacttaa 23826271  T
Q  781 ta---ataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatcct 877  Q
    ||   ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| |||||||||||||||||| |||||    
T  23826270 taataataaataacacaaaactaaaaaatatattaaagaaagaagatttaccataaaagagaaaaagaacttggcagattctcaagcatatcataatcct 23826171  T
Q  878 tctcaactttga 889  Q
    ||||||||||||    
T  23826170 tctcaactttga 23826159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 30 - 312
Target Start/End: Original strand, 17038056 - 17038339
Alignment:
Q  30 attgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcct 129  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  17038056 attgttcttattcatccaaccatattatcagacttccattttgttttctgcttgattctttttgctccaagttgttgacactctacaaatttattttcct 17038155  T
Q  130 tctctttcttcatcaaatcttcc---atccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgctagttgatatcaaaag 226  Q
    | ||||||||| ||||||||||    |||||||||  || ||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||    
T  17038156 tgtctttcttcttcaaatcttcttgaatcctttta--cagtattcaactatttggcctgccaaaataaacaatataatgcatgctagctgatatcaaaag 17038253  T
Q  227 ttctcaaacatatcagttcttaaacaatataatgcaatccaacaaaacaaggatgaatgtccaacttttcatagccatgcagtaat 312  Q
    |||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||    
T  17038254 ttcttaaacatatcagttcttgaacaatataatgcaatccaataaaacaaggatgaatgttcaatttttcatagctatgcagtaat 17038339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 177; E-Value: 6e-95
Query Start/End: Original strand, 581 - 805
Target Start/End: Original strand, 17038934 - 17039158
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |    
T  17038934 aataatataatcaattttaaaagacaaatattacttaagttgatcatattgcattgcatgtgttgttatatactagaggacttacttcattactcatgca 17039033  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||     
T  17039034 gttccatggtttaacaaccattttattaacatcagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatagattttttatttat 17039133  T
Q  781 taataaataacgcaaaactaaaaaa 805  Q
    ||||||||||| |||||||||||||    
T  17039134 taataaataactcaaaactaaaaaa 17039158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 426 - 553
Target Start/End: Complemental strand, 23615639 - 23615512
Alignment:
Q  426 tcgaacgactctgaaactcgagcaaaaggaggaatcacaagaattcatgaaacaatgttcagaaatcagaccttataatatgaagcattccaccaatccc 525  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23615639 tcgaacgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcaaaccttataatatgaagcattccaccaatccc 23615540  T
Q  526 ggggtcagcctattcaatcaaacacacc 553  Q
    ||||||||||||||||||||||||||||    
T  23615539 ggggtcagcctattcaatcaaacacacc 23615512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 426 - 553
Target Start/End: Complemental strand, 23847035 - 23846908
Alignment:
Q  426 tcgaacgactctgaaactcgagcaaaaggaggaatcacaagaattcatgaaacaatgttcagaaatcagaccttataatatgaagcattccaccaatccc 525  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  23847035 tcgaacgactctgaaactcaagcaaaaggaggaatcacaagaattcatcaaacaatgttcagaaatcaaaccttataatatgaagcattccaccaatccc 23846936  T
Q  526 ggggtcagcctattcaatcaaacacacc 553  Q
    ||||||||||||||||||||||||||||    
T  23846935 ggggtcagcctattcaatcaaacacacc 23846908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 794 - 889
Target Start/End: Original strand, 17039177 - 17039272
Alignment:
Q  794 aaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttctcaactttga 889  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |||| ||||||||||||||||||||||||||    
T  17039177 aaaactaaaaaatatattaaacaaagaagatttaccataagagaaaaaaagaactcggcagattttcaaacatatcatgatccttctcaactttga 17039272  T

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Target: chr5; HSP #10
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 487 - 585
Target Start/End: Original strand, 17038698 - 17038796
Alignment:
Q  487 gaaatcagaccttataatatgaagcattccaccaatcccggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaataa 585  Q
    |||||||||||||||||  |||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17038698 gaaatcagaccttataacgtgaagcattccaccaatctcgggaacagcctattcaatcaaacacaccaaaagaataagcaaagataatttatacaataa 17038796  T

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Target: chr5; HSP #11
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 349 - 427
Target Start/End: Original strand, 17038496 - 17038574
Alignment:
Q  349 taaccattcctgaaacaagtcaatagcaaggaactccaatacaaccagtaacatctatatgattgtgaatttccaaatc 427  Q
    |||||||| |||||| | ||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  17038496 taaccattgctgaaagatgtcgatagcaaggaactctaatacaaccagtaacatctatatgattgtaaatttccaaatc 17038574  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 512 - 582
Target Start/End: Original strand, 15162744 - 15162814
Alignment:
Q  512 attccaccaatcccggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaa 582  Q
    |||||||||||||||| |  |||||| ||||  |||  ||||||||||||||||||||| |||||||||||    
T  15162744 attccaccaatcccggagcaagcctactcaaagaaatgcaccaaaagaataagcaaagagaattcatacaa 15162814  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 585
Target Start/End: Complemental strand, 23761181 - 23761147
Alignment:
Q  551 accaaaagaataagcaaagataattcatacaataa 585  Q
    |||||||||||||||||||||||||||||||||||    
T  23761181 accaaaagaataagcaaagataattcatacaataa 23761147  T

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Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 551 - 585
Target Start/End: Complemental strand, 23826642 - 23826608
Alignment:
Q  551 accaaaagaataagcaaagataattcatacaataa 585  Q
    |||||||||||||||||||||||||||||||||||    
T  23826642 accaaaagaataagcaaagataattcatacaataa 23826608  T

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Target: chr2 (Bit Score: 173; Significance: 1e-92; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 581 - 889
Target Start/End: Original strand, 15514869 - 15515172
Alignment:
Q  581 aataatataatcaattttaaaagacaaatattacttaagtttatcatattgcattgcatgtgttgttatatactagagaacttacttcattactcatgga 680  Q
    ||||||||||| ||||||||||||||||| |||||||||   |||||     |||||||||||||| ||||||||||| |||||||||||||||||||||    
T  15514869 aataatataattaattttaaaagacaaatgttacttaaggagatcat-----attgcatgtgttgtaatatactagaggacttacttcattactcatgga 15514963  T
Q  681 gttccatgctttaacagccattttattaacaccagaattttgatctacttctttaaaaattttgccaaacttatccctgaaatatacatttttagcttaa 780  Q
    |||||||||||||||  |||||||||||||| |  ||||||||||||||||||||||| ||| |||||||| |||||| |||||||  |||||  |||||    
T  15514964 gttccatgctttaacgaccattttattaacatcgaaattttgatctacttctttaaaattttcgccaaactcatccctaaaatataatttttttacttaa 15515063  T
Q  781 taataaataacgcaaaactaaaaaatatattaaacaaagaagatttaccataagagagaaaaagaactcggcggattctcaagcatatcatgatccttct 880  Q
    ||||||| |||  |||| ||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||| ||||||||||||||||    
T  15515064 taataaacaacataaaaataaaaaatatattaaacaaagaagatttaccataaaagaaaaaaagaattcggcagattctcaagtatatcatgatccttct 15515163  T
Q  881 caactttga 889  Q
    |||||||||    
T  15515164 caactttga 15515172  T

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Target: chr2; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 32 - 204
Target Start/End: Original strand, 15514158 - 15514331
Alignment:
Q  32 tgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttc 131  Q
    ||||| ||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||||     
T  15514158 tgttcttattcttccaaccatattctcagccttccattttgttttttgcttgattctttttgctccaagttgttgacgctctacaaatttattttcctta 15514257  T
Q  132 tctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataat 204  Q
    ||||||||| ||||||||||   |||||||||||  | |||||||||||||||| ||||||| |||||||||||||    
T  15514258 tctttcttcttcaaatcttctcgcatccttttat--agtattcaactttttgtcttgccaaaataaacaatataat 15514331  T

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Target: chr2; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 506 - 582
Target Start/End: Original strand, 15514654 - 15514730
Alignment:
Q  506 tgaagcattccaccaatcccggggtcagcctattcaatcaaacacaccaaaagaataagcaaagataattcatacaa 582  Q
    ||||||||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  15514654 tgaagcattccaccaatcctggagtcagcttattcaatcaaatacaccaaaagaataagcaaagataattcatacaa 15514730  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 30267530 - 30267618
Alignment:
Q  123 ttttccttctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    |||||||| ||||||||| ||||||||||   ||||||||||||   ||||||||||||||| ||||||||  |||||||||||||||||||    
T  30267530 ttttcctt-tctttcttcttcaaatcttctcacatccttttatag--tattcaactttttgttctgccaaaacaaacaatataatgcatgct 30267618  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 208
Target Start/End: Original strand, 44921673 - 44921758
Alignment:
Q  123 ttttccttctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcat 208  Q
    |||||||| ||||||||| ||||||||||   ||||||||||  || |||||||||||||||  ||||||| |||||||||||||||||    
T  44921673 ttttcctt-tctttcttcttcaaatcttctcacatcctttta--cagtattcaactttttgttatgccaaaataaacaatataatgcat 44921758  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 15539143 - 15539030
Alignment:
Q  74 tttctgcttgattctttttgttccaacttgttgacactctacaaatttattttccttctctttcttcatcaaatcttc---catccttttatacaatatt 170  Q
    |||||||||||||||||||  ||||  |||||||  |||||||||||| | |||||| | ||||||| ||||||||||   ||||||||  || | ||||    
T  15539143 tttctgcttgattcttttttatccatgttgttgatgctctacaaatttgtcttccttgtgtttcttcttcaaatcttctcacatccttt--tagagtatt 15539046  T
Q  171 caactttttgtcctgc 186  Q
    ||||||||||| ||||    
T  15539045 caactttttgttctgc 15539030  T

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Target: scaffold0684 (Bit Score: 108; Significance: 9e-54; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 108; E-Value: 9e-54
Query Start/End: Original strand, 30 - 161
Target Start/End: Complemental strand, 336 - 206
Alignment:
Q  30 attgttcctattcatccaaccatattatcagccttccattttgttttctgcttgattctttttgttccaacttgttgacactctacaaatttattttcct 129  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  336 attgttcctattcatccaaccatattatcaaccttccattt-gttttctgcttgattctttttgttccaagttgttgacactctacaaatttattttcct 238  T
Q  130 tctctttcttcatcaaatcttccatcctttta 161  Q
    |||||||||| |||||||||| ||||||||||    
T  237 tctctttctttatcaaatcttgcatcctttta 206  T

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Target: scaffold0105 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 192 - 104
Alignment:
Q  123 ttttccttctctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    |||||||| ||||||||| ||||||||||   ||||||||||||   ||||||||||||||| ||| ||||  |||||||||||||||||||    
T  192 ttttcctt-tctttcttcttcaaatcttctcacatccttttatag--tattcaactttttgttctggcaaaacaaacaatataatgcatgct 104  T

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Target: scaffold1808 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1808
Description:

Target: scaffold1808; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 211
Target Start/End: Original strand, 1008 - 1087
Alignment:
Q  132 tctttcttcatcaaatcttc---catccttttatacaatattcaactttttgtcctgccaaactaaacaatataatgcatgct 211  Q
    ||||||||| ||||||||||   ||||||||||  || |||| |||||||||| |||||||| ||| ||||||||||||||||    
T  1008 tctttcttcttcaaatcttctcacatcctttta--cagtattaaactttttgttctgccaaaataa-caatataatgcatgct 1087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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