View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514-Insertion-5 (Length: 213)
Name: NF4514-Insertion-5
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 8 - 213
Target Start/End: Original strand, 1389768 - 1389972
Alignment:
| Q |
8 |
ttattttcaggttgaaaaattcgaatattataagcgtctgaaaatgttaatat--taagttgacaaggaataccaagcaataccgtgaagaaataatctc |
105 |
Q |
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| T |
1389768 |
ttattttcaggctgaaaaattcgaatattataagcgtctgaaaatgttaatatattaagttgacaaggaataccatgcaataccgtgaagaaataatctc |
1389867 |
T |
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| Q |
106 |
cctaattcctagaaaaacaaagaacaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagctaaacgtcata |
205 |
Q |
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| T |
1389868 |
cctaattcctagaaaaaccaagaagaatttgtagtaagtcaggaagaatcta---atggcagaatgaaagtgtcataaagagtgaaagctaaacgtcata |
1389964 |
T |
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| Q |
206 |
tataaaat |
213 |
Q |
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| T |
1389965 |
tataaaat |
1389972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 4747245 - 4747428
Alignment:
| Q |
16 |
aggttgaaaaattcgaatattataagcgtctgaaaatgttaatattaagttgacaaggaatacc---aagcaataccgtgaagaaataatctccctaatt |
112 |
Q |
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| T |
4747245 |
aggttcaaaaattcaaatattataagcgtcagaaaatgtgaatattaagttgacgagaaataccttgaggcaggaccgtgaagaaataatctccccaatc |
4747344 |
T |
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| Q |
113 |
cctagaaaaacaaagaacaatttgtagtaagtcaggaagaatctaatcatgggagaacgaaagtgtcataaagagtgaaagctaaacgtc |
202 |
Q |
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| T |
4747345 |
cccagcaatacctacaacagttt---gcaagtcagtaagcatcta---atgggagaacaaaagtgtcataaagagtgaaagctagacgtc |
4747428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 4709417 - 4709458
Alignment:
| Q |
161 |
atgggagaacgaaagtgtcataaagagtgaaagctaaacgtc |
202 |
Q |
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| T |
4709417 |
atgggagatcaaaagtgtcataaagagtgaaagctagacgtc |
4709458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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