View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514_high_11 (Length: 277)
Name: NF4514_high_11
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 16065555 - 16065801
Alignment:
| Q |
17 |
atgaagttgattagttacattttaaaaactagacattgtcccatttaatttcgttcctttccattccaatcaaaca----tacccagaataatttgatat |
112 |
Q |
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| T |
16065555 |
atgaaattgattagttacattttaaaaactagacattgtcccatttaatttcgttcctttccattccaatcaaacaaacatacccagaataatttgatat |
16065654 |
T |
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| Q |
113 |
ttcaattcaagtggtcccttccctacactttttaatttgattggtgtatagccatcaaagg-actaaggaatcatcaaatatagaaaaagaattgcttca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
16065655 |
--caattcaagtggtcccttccctacactttttaatttgattggtgtataaccatcaaagggaccaaggaatcatcaaatatagaaaaagaattgcttca |
16065752 |
T |
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| Q |
212 |
ttggtcccttaaattaactgaccaataaagtatcctactagtctttagt |
260 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16065753 |
ttggtcccttaaattaactgaccaataaagtaccctactagtctttagt |
16065801 |
T |
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