View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514_high_5 (Length: 337)
Name: NF4514_high_5
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 14 - 319
Target Start/End: Original strand, 23128659 - 23128964
Alignment:
| Q |
14 |
gagatgaacaagtatcagccacgcgattttttctgatatctccgacgaagatgatgatgacgaggatgacgatgaattctcgctgcgcataggacttcga |
113 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23128659 |
gagaagaacaagtatcagccacgcgattttttctgatatctccgatgaagatgatgatgacgaggatgacgatgaattctcgctgcgcatcggacttcga |
23128758 |
T |
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| Q |
114 |
tagtacgactccggtaacggagactgcggcatatcgaagacgatatcagcgagaattccaccgtaatcggcgaggaaggttaggtaattcatgacatagc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128759 |
tagtacgactccggtaacggagactgcggcatatcgaagacgatatcagcgagaattccaccgtaatcggcgaggaaggttaggtaattcatgacatagc |
23128858 |
T |
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| Q |
214 |
gtgtgagaggatgaacaccaccaccggagacttgtttctttgaagaatctttctgaatagctgattcgaattcctttaacatcgttttaacagcttctgc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23128859 |
gtgtgagaggatgaacaccaccaccggagacttgtttctttgaagaatctttctgaatagctgattcgaattcctttaacatcgttttaacagcttctgc |
23128958 |
T |
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| Q |
314 |
gagttt |
319 |
Q |
| |
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||||| |
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| T |
23128959 |
aagttt |
23128964 |
T |
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