View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4514_low_13 (Length: 278)

Name: NF4514_low_13

Description: NF4514

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4514_low_13

[»] chr4 (2 HSPs)

Target: chr4 (Bit Score: 134; Significance: 8e-70; HSPs: 2)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 134; E-Value: 8e-70

Query Start/End: Original strand, 17 - 150

Target Start/End: Complemental strand, 35202726 - 35202593

Alignment:

Q	17	cagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcacatcatgacaagaagagttaccataaagaagagaattgat	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35202726	cagaagaagaacttgaaactcttgtagaattgaaccttgttgcaaaaggaaagttcatcacatcatgacaagaagagttaccataaagaagagaattgat	35202627	T

Q	117	atggtttgaggtagaagcaatatcaaaactatgg	150	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35202626	atggtttgaggtagaagcaatatcaaaactatgg	35202593	T

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Target: chr4; HSP #2

Raw Score: 76; E-Value: 3e-35

Query Start/End: Original strand, 177 - 260

Target Start/End: Complemental strand, 35202572 - 35202489

Alignment:

Q	177	agaaggagggtttgaattagcactagtaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaggagtgatt	260	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	35202572	agaaggagggtttgaattagcactattaggagttgaagaagaaggagaagcagtagcagtatcaatatttgaagaagagtgatt	35202489	T

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