View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4514_low_15 (Length: 251)

Name: NF4514_low_15
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4514_low_15
NF4514_low_15
[»] chr4 (4 HSPs)
chr4 (10-224)||(35649889-35650103)
chr4 (10-224)||(35677969-35678183)
chr4 (14-227)||(35642316-35642529)
chr4 (23-224)||(35656582-35656783)
[»] scaffold1750 (1 HSPs)
scaffold1750 (23-224)||(888-1089)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 35649889 - 35650103
Alignment:
Q  10 attatactttctctgtaggacatgtttattgcaggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35649889 attatactttctctgtaggacatgtttattgcaggtactgatactacttacacagtcctagaatggacaatgacagaactattaagacaccaaacagtga 35649988  T
Q  110 tgcataaattgcaagatgaggtgagaactgtggttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35649989 tgcataaattgcaagatgaggtgagaactgtggttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaagctgtgatcaa 35650088  T
Q  210 agaaattcttcgcct 224  Q
    ||||| |||||||||    
T  35650089 agaaactcttcgcct 35650103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 10 - 224
Target Start/End: Original strand, 35677969 - 35678183
Alignment:
Q  10 attatactttctctgtaggacatgtttattgcaggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35677969 attatactttctctgtaggacatgtttattgcaggtactgatactacttacacagtcctagaatggacaatgacagaactattaagacaccaaacagtga 35678068  T
Q  110 tgcataaattgcaagatgaggtgagaactgtggttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||  |||||||||||||| |||||||||||    
T  35678069 tgcataaattgcaagatgaggtgagaactgtggttggtaacataactcatgtaactgatgatgatttggttattatgaactacttgaaagctgtgatcaa 35678168  T
Q  210 agaaattcttcgcct 224  Q
    ||||| |||||||||    
T  35678169 agaaactcttcgcct 35678183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 35642316 - 35642529
Alignment:
Q  14 tactttctctgtaggacatgtttattgcaggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgca 113  Q
    ||||||||||| |||||||||||  |||||||||||||||||||||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||    
T  35642316 tactttctctgcaggacatgtttgctgcaggtactgatactacctacacagtcttagaatgggcaatgacagaactgttaagacaccaaacagtgatgca 35642415  T
Q  114 taaattgcaagatgaggtgagaactgtggttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaa 213  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||    
T  35642416 taaattgcaagatgaggtgagaactgtggtaggtaatagaactcatgtaactgaaaaggatttggttaacatgaactacttgaaggctgtgattaaagaa 35642515  T
Q  214 attcttcgccttca 227  Q
    | ||||||||||||    
T  35642516 actcttcgccttca 35642529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 35656582 - 35656783
Alignment:
Q  23 tgtaggacatgtttattgcaggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgca 122  Q
    ||||||||||||||  ||||||||| || || ||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||    
T  35656582 tgtaggacatgtttgctgcaggtacagacacaacctacacagttctagaatgggcgatgacagaactattaagacaccaaactgtgatgcataaattgca 35656681  T
Q  123 agatgaggtgagaactgtggttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgc 222  Q
    ||||||| |||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||    
T  35656682 agatgagttgaggaatgtggttggtaacaaaactcatgtaactgaggaggatttggttaacatgaactacttgaaagctgtgatcaaagaaactcttcgc 35656781  T
Q  223 ct 224  Q
    ||    
T  35656782 ct 35656783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 224
Target Start/End: Original strand, 888 - 1089
Alignment:
Q  23 tgtaggacatgtttattgcaggtactgatactacctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgca 122  Q
    ||||||||||||||   |||||||||||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||| |||||||||||||||||    
T  888 tgtaggacatgtttgccgcaggtactgatactacctacacagttctagaatgggcaatgacagaattattaagacaccaaactgtgatgcataaattgca 987  T
Q  123 agatgaggtgagaactgtggttggtaacagaactcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgc 222  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| || ||||||||||  |||||||||||||| |||||||||||||||| |||||||    
T  988 agatgaggtgagaactgtggttggcaacaaaactcatgtaactgaagatgatttggttaatatgaactacttgaaagctgtgatcaaagaaactcttcgc 1087  T
Q  223 ct 224  Q
    ||    
T  1088 ct 1089  T

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