View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514_low_16 (Length: 239)
Name: NF4514_low_16
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514_low_16 |
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| [»] scaffold1750 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 35678302 - 35678523
Alignment:
| Q |
1 |
tcttcaatttgggaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35678302 |
tcttcaatttgggaagaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggag |
35678401 |
T |
|
| Q |
101 |
caggaaggagaggttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
35678402 |
caggaaggagaggttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgttcatcaatttgattggaaattgcctgatgg |
35678501 |
T |
|
| Q |
201 |
agtagaagggaaggatctggac |
222 |
Q |
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||||||||||||||||||||| |
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| T |
35678502 |
tgtagaagggaaggatctggac |
35678523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 35656903 - 35657123
Alignment:
| Q |
2 |
cttcaatttgggaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagc |
101 |
Q |
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|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35656903 |
cttcaagttgggaagaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagc |
35657002 |
T |
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| Q |
102 |
aggaaggagaggttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatgga |
201 |
Q |
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| T |
35657003 |
aggaaggaggggttgtcctggtgtgttgtttggaattgcagtgaatgaattggtgctagcaaaccttgtttaccaatttgattggaaattgcctgatgga |
35657102 |
T |
|
| Q |
202 |
gtagaagggaaggatctggac |
222 |
Q |
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| T |
35657103 |
gtagaagggaaggatttggac |
35657123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 35650223 - 35650424
Alignment:
| Q |
2 |
cttcaatttgggaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagc |
101 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35650223 |
cttcaagttgggatcaacctctagagtttaaaccagaaaggtttatgaacagttcaatagattataaaggattggattttgaacttattccatttggagc |
35650322 |
T |
|
| Q |
102 |
aggaaggagaggttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatgga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
35650323 |
aggaaggagaggttgtcctggagtgttgtttgctattgctgtcaatgaattggtgctagcaaaccttgttcaccattttgattggaaattgcctgatgga |
35650422 |
T |
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| Q |
202 |
gt |
203 |
Q |
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|| |
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| T |
35650423 |
gt |
35650424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 35642646 - 35642845
Alignment:
| Q |
2 |
cttcaatttgggaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagc |
101 |
Q |
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|||||| ||||||||| ||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35642646 |
cttcaagttgggaacatcctttagagtttaaaccagaaaggtttctgaacagttcaatagatttcaaaggatttgattttgaacttatcccatttggagc |
35642745 |
T |
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| Q |
102 |
aggaaggagaggttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatgga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
35642746 |
aggaaggagaggttgtcctggagtgttgtttgctattgctgtcaatgaattggtgctagcaaaccttgttcaccattttgattggaaattgcctgatgga |
35642845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 1209 - 1408
Alignment:
| Q |
2 |
cttcaatttgggaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagc |
101 |
Q |
| |
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|||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1209 |
cttcaagttgggatcaacctctagagtttaaaccagaaaggtttatgaacagttcaatagattataaaggattggattttgaacttattccatttggagc |
1308 |
T |
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| Q |
102 |
aggaaggagaggttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatgga |
201 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |
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| T |
1309 |
aggaaggagaggttgtcctggagtgttgtttgctattgctgtcaatgaattggtgctagcaaaccttgttcaccattttgattggaaattgcctgatgga |
1408 |
T |
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