View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514_low_2 (Length: 523)
Name: NF4514_low_2
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 4 - 506
Target Start/End: Complemental strand, 52725736 - 52725239
Alignment:
| Q |
4 |
ggtagattatactaaaggcctacaaggattttcttaccaaagggtgtcaaagatatctcagataagcaatatgaagctcagcaatgtaaatactaatttt |
103 |
Q |
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|||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725736 |
ggtagagtatactaaaggcttacaaggattttattaccaaagggtgtcaaagatatctcagataagcaatatgaagctcagcaatgtaaatactaatttt |
52725637 |
T |
|
| Q |
104 |
gtattttcaatagctaatcaaaggatgaagtaaatgaatgggggaaaagactaacttgaatgatatcatgctcggatatgtcttttgcggccattctact |
203 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52725636 |
gtattttcaatagctaatctaaggatgaagtaaatgaatgggggaaaagactaacttgaatgatatcatgcttggatatgtcttttgcggccattctact |
52725537 |
T |
|
| Q |
204 |
gtcgataattgctggaaatgaagggaataagttgcaagta-agaattaaaggatgagaaaacagtagataaatcatgagtgagaagagtatatttaccaa |
302 |
Q |
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||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52725536 |
gtcaataattgctggaaatgaagggaataagttgcaagtagagaattaaaggatgagaaaacagtagataaatcatgagtgagaagggtatatttaccaa |
52725437 |
T |
|
| Q |
303 |
caatacattagttagtaaatctcatgagagttgaaagtaaattggagaaagaatgaa--tgtttaggaactaaattgatccttgattaaatgaacagtaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | | |||| ||| | | |||||||||||||||| |
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| T |
52725436 |
caatacattagttagtaaatctcatgagagttgaaagtaaattggagaaagaatgaaattgatcattgattaaa-tgaacatgaattaaatgaacagtaa |
52725338 |
T |
|
| Q |
401 |
aaatat-aaaaaagagtgttaaaggaaggaagaaagaaagacagacatcgaacgagtctgtaagcatccctcttgtattcatcttgctcatttaggtcca |
499 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725337 |
aaatataaaaaaagagtgttaaagg--------aagaaagacagacatcgaacgagtctgtaagcatccctcttgtattcatcttgctcatttaggtcca |
52725246 |
T |
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