View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4514_low_9 (Length: 318)
Name: NF4514_low_9
Description: NF4514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4514_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 316
Target Start/End: Complemental strand, 27548090 - 27547790
Alignment:
| Q |
16 |
ataaaaatccctattagattaatcattacaaaattcaattaactatgattatgaaacaagcgtcacaaaaccaatattaatctagcgaattcaatcaaac |
115 |
Q |
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| T |
27548090 |
ataagaatccctattagattaatcattacaaaatccaattaactatgattatgaaacaagcgtcacaaaaccaatattaatctagcgaattcaatcaaac |
27547991 |
T |
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| Q |
116 |
ttacaacttattgttttaaatgctatcaatctatacaaaataaatcaaagcaagcgtttaattctacttcaaaaaatccaaaatcttatagtgaactaaa |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27547990 |
ttacaactaattgttttaaatgctatcaatctatacaaaataaatcaaagcaagcgtttaaatctacttcaaaaaatccaaaatcttatagtgaactaaa |
27547891 |
T |
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| Q |
216 |
gtgcaaaaatgagttatatatgattaagcatcaatacctaaaacgattttgcaaatgtaacactatatttataatcactttataggttaacctatgctac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
27547890 |
gtgcaaaaatgagttatatatgattaagcatcaatacctaaaacgattttgcaaatgtaacactatatttataatcactttataggttaatctaggctac |
27547791 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
27547790 |
t |
27547790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 184
Target Start/End: Complemental strand, 23255540 - 23255459
Alignment:
| Q |
103 |
aattcaatcaaacttacaacttattgttttaaatgctatcaatctatacaaaataaatcaaagcaagcgtttaattctactt |
184 |
Q |
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| T |
23255540 |
aattcaatcaaacttacaaccaagtgttctaaatcctatcaacctatacagaataaatcaaagcaagcgtttaaatctactt |
23255459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 23255929 - 23255877
Alignment:
| Q |
16 |
ataaaaatccctattagattaatcattacaaaattcaattaactatgattatg |
68 |
Q |
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|||| |||||||||| ||||||||||||| |||| |||||||||| ||||||| |
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| T |
23255929 |
ataacaatccctattcgattaatcattacgaaatccaattaactaggattatg |
23255877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 23399285 - 23399342
Alignment:
| Q |
210 |
actaaagtgcaaaaatgagttatatatgattaagcatcaatacctaaaacgattttgc |
267 |
Q |
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||||||| |||||||||| || ||||||||||| |||||||||||||| || ||||| |
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| T |
23399285 |
actaaagagcaaaaatgaatttgatatgattaagtatcaatacctaaaatgaatttgc |
23399342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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