View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515-Insertion-1 (Length: 932)
Name: NF4515-Insertion-1
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515-Insertion-1 |
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Alignment Details
Target: chr3 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 329 - 923
Target Start/End: Complemental strand, 50686202 - 50685611
Alignment:
| Q |
329 |
gtttgtagggaagacgcaattgattaatcattttcgagttaatgatagttggtacctggttgatttgcctggatatgggtatgtatggttttaaggttta |
428 |
Q |
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| T |
50686202 |
gtttgtagggaagacgcaattgattaatcattttcgagttaatgatagttggtacctggttgatttgcctggatatgggtatgtatggttttaaggttta |
50686103 |
T |
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| Q |
429 |
accttacaaagcaatcctgttttatgttacaaatttggggattaacattggaaatagcgaccaatgtatttgatacaaacatgttagtatggtttgcgaa |
528 |
Q |
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| T |
50686102 |
accttacaaagcaatcttgttttatgttacaaatttggggattaacattggaaatagcgaccaatgtatttgatacaaacatgttagtatggtttgcgaa |
50686003 |
T |
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| Q |
529 |
tattgtttgtgaattttgagtgtcaaacatcataacagtacgattccattatttatnnnnnnngtttggaaatatcgaagttgtatttgagtcccacatt |
628 |
Q |
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| T |
50686002 |
tattgtttgtgaattttgagtgtcaaacatcataacagtacgattccattatttataaaa---ggttagaaatatcgaagttgtatttgagtcccacatt |
50685906 |
T |
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| Q |
629 |
accaacaattcttgggccattggaatgaatatatgtatttggtcagcctcatttcatcttgtgcgccaatttttgagagcgctatcgaaacctgtttagc |
728 |
Q |
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| T |
50685905 |
accaaaaattcttgggccattggaatgaatatatgtatttggtcagcctcatttcatcttgtgcgccaatttttgagagcgctatcgaaacctgtttagc |
50685806 |
T |
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| Q |
729 |
atagtattagaaccgaattttgtagggcatatgagagttgtacccaaacccacaccagacgtgagcatggttattgaagttgtattttagtctcatatgg |
828 |
Q |
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| T |
50685805 |
atagtattagaaccgaattttgtagggcatatgagagttgtacccaaacccacaccagacgtgagcatggttattgaagttgtattttagtctcatatgg |
50685706 |
T |
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| Q |
829 |
ttaaggttccttggctgtgcaatgtataaacgtctttgtgcaccctcattttatgaggtaactttcgagaagttcatatggtgtcttatgatttt |
923 |
Q |
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| T |
50685705 |
ttaaggttccttggctgtgcaatgtataaacgtctttgtgcaccctcattttatgaggtaactttcgagaagttcatatggtgtcttatgatttt |
50685611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 252; E-Value: 1e-139
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 50686528 - 50686273
Alignment:
| Q |
7 |
aaatgcaagaatcttaaacggttcaaatatattactcagtaactacgccaatgatgctcaaattatacaagcagattttgtcaaaagcagtgttagaacc |
106 |
Q |
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| T |
50686528 |
aaatgcaagaatcttaaacggttcaaatatattactcagtaactacgccaatgatgctcaaattatacaagcagattttgtcaaaagcagtgttagaacc |
50686429 |
T |
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| Q |
107 |
gaagattgtccttccgatggtcttcctgagttcgctcttgttggtcgttccaatgttgggaaatcatcgcttcttaattctattgttcgccgcaagaaac |
206 |
Q |
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| T |
50686428 |
gaagattgtccttccgatggtcttcctgagttcgctcttgttggtcgttccaatgttgggaaatcatcgcttcttaattctattgttcgccgcaagaaac |
50686329 |
T |
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| Q |
207 |
tcgctttaacttcaaagaaacctggtctcttattattattactcacttttcttcac |
262 |
Q |
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| T |
50686328 |
tcgctttaacttcaaagaaacctggtctcttattattattacacacttttcttcac |
50686273 |
T |
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