View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515-Insertion-2 (Length: 840)
Name: NF4515-Insertion-2
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515-Insertion-2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 746; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 8 - 840
Target Start/End: Complemental strand, 14582721 - 14581891
Alignment:
| Q |
8 |
ccttcaatctaaagtgtcagtgctacatagatagagtgattgatacatagccattaagactccaaaaaggaacccattgcctttttgtgacttgccggtt |
107 |
Q |
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| T |
14582721 |
ccttcaatctaaagtgtcagtgctacatagatagagtgattgatacatagccattaagactccaaaaaggaatccattgcctttttgtgacttgccggtt |
14582622 |
T |
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| Q |
108 |
tgccatgctataacaaaagcttctgatcctttggagaaaaatgcttaattatttgcttctgctactcagaaaaaagcataatccctttgtgatatgagaa |
207 |
Q |
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| T |
14582621 |
tgccatgctataacaaaagcttctgatcctttggagaaaaatgcttaattatttgcttctgctactcagaaaaaagcataatccctttgtgatatgagaa |
14582522 |
T |
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| Q |
208 |
gccaaaagctaaagcacaaagcaaactgtttaggaaaatggagggagagtgtgtagggtttttgtttaataccctctcacacttctctccatgtttgttt |
307 |
Q |
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| T |
14582521 |
gccaaaagctaaagcacaaagcaaactgtttaggaaaatggagggagagtgtgtagggtttttgtttaataccctctcacacttctctccatgtttgttt |
14582422 |
T |
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| Q |
308 |
taagaaccatggattgatttttgccaacaaagaagcttcatccttattacaaacaagattcaagtcttgatggattggtttagaggatgcttaaagggct |
407 |
Q |
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| T |
14582421 |
taagaaccatggattgatttttgccaacaaagaagcttcatccttattacaaacaagattcaagtcttgatggattggtttagaggatgcttaaagggct |
14582322 |
T |
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| Q |
408 |
ccacatagaaaggtagtggggaagttggtgtctctgatcattgttttaaatacttgtgatggttgagaagtatatatgaaagtggtgtgtgtatcgttct |
507 |
Q |
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| T |
14582321 |
ccacatagaaaggtagtggggaagttggtgtctctgatcattgttttaaatacttgtgatggttgagaagtatatatgaaagtggtgtgtgtatcattct |
14582222 |
T |
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| Q |
508 |
ttttcattatctaaaatgactatttaacacccatcaaaagttgcaatgtataagcactcacataaaagaaaatagtactactgtgtgtccattaaaataa |
607 |
Q |
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| T |
14582221 |
ttttcattatctaaaatgactatttaaca-ccatcaaaagttgcaatgtataagcactcacataaaagaaaatagtactactgtgtgtccattaaaataa |
14582123 |
T |
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| Q |
608 |
ttataatggataaaagatgtttgtttgattaattcaatcttaatctcaacctaatggcccaaccttttttgatatcaatctcatcatagccaagatatac |
707 |
Q |
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| T |
14582122 |
ttataatggat-aaagatgtttgtttgattaattcaatcttaatctcaacctaatggcctaaccttttttgatatcaatctcatcatagccaagatatac |
14582024 |
T |
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| Q |
708 |
ctaacctagttg---ggatttgttacccttttatttttcttccaaccgtttaccatgaaaacaaagttacatgtgagcatttatcgactttgttggataa |
804 |
Q |
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| T |
14582023 |
ctaacctagttggttggatttgttacccttttatttatcttcgaaccgttta-catgagaataaagttacatgcgagcatttatcgactttgtt-gataa |
14581926 |
T |
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| Q |
805 |
ttaatttttggtaagaaattttcgctaacaatcttt |
840 |
Q |
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| T |
14581925 |
ttaatttttgataagaaa-tttcgctaacaatcttt |
14581891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 4323856 - 4323827
Alignment:
| Q |
5 |
acaccttcaatctaaagtgtcagtgctaca |
34 |
Q |
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| T |
4323856 |
acaccttcaatctaaagtgtcagtgctaca |
4323827 |
T |
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