View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_high_19 (Length: 252)
Name: NF4515_high_19
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_high_19 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 37317498 - 37317252
Alignment:
| Q |
1 |
taattagtcatcatatttgtatactagctagataggctaagatgtatatatttagaatcttatcttatgtacatttgaaagcaaaaataaaatattcaca |
100 |
Q |
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| T |
37317498 |
taattagtcatcatatttgtatactagctagataggctaagatgtatatatttagaatcttatcttatgtacatttgaaagcaaaaataaaatattcaca |
37317399 |
T |
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| Q |
101 |
tcataagctgttagactatcaatgtctaattggaatcttctttttaccaaaattagataagttaatgtaaagaaatgtattgtacattttttatatatct |
200 |
Q |
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| T |
37317398 |
tcataagctgttagactatcaatgtctaattggaatcttctttttaccaaaattagataagttaatgtaaagaaatgtattgtacattttttatatatct |
37317299 |
T |
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| Q |
201 |
tcaattccttacttccaaacttcttgttgcagtacccctatgcttct |
247 |
Q |
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| T |
37317298 |
tcaattccttacttccaaacttcttgttgcagtacccctattcttct |
37317252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 37242256 - 37242185
Alignment:
| Q |
75 |
ttgaaagcaaaaataaaatattcacatcataagctgttagactatcaatgtctaattggaatcttcttttta |
146 |
Q |
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| T |
37242256 |
ttgaaagcaaaactaaaatattcaccccattacctgtaaaactattaatgtctaattggaatcttctcttta |
37242185 |
T |
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