View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_high_23 (Length: 237)
Name: NF4515_high_23
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_high_23 |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 44135495 - 44135296
Alignment:
| Q |
19 |
caaagacatttatagaattcgaatttaagacctcttaaatttaagacatgtcttt-atcaatattatgtgtgacttatttttaaagtgtatgattcacat |
117 |
Q |
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| T |
44135495 |
caaagacatttatagaattcgaatttaagacctcttaaatttaagacatgtcttttatcaatactatgtgtgactcatttttaaagtgtatgattcacat |
44135396 |
T |
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| Q |
118 |
taattttattcaataaaagatcaagtgttnnnnnnngagtgttcgtatgatgaatcatatattgatgtttttattgcaaaacaaagcaaattacgaataa |
217 |
Q |
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| T |
44135395 |
tagtttcattcaataaaagatcaaatgttaaaaaa--agtgttcgta-----aatcatatattgatgtttttattgcaaaacaaagcaaattacgaataa |
44135303 |
T |
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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50057108 - 50057010
Alignment:
| Q |
1 |
tttatatatacctcgctccaaagacatttatagaattcgaatttaagacctcttaaatttaagacatgtc-tttatcaatattatgtgtgacttatttt |
98 |
Q |
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| T |
50057108 |
tttatatatacctcactccaaagacattcatataacttgaatttaagacctctcaaatttaagacttgtcttttatcaatattatgcatgactcatttt |
50057010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 50055901 - 50055857
Alignment:
| Q |
94 |
atttttaaagtgtatgattcacattaattttattcaataaaagat |
138 |
Q |
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| T |
50055901 |
atttttaaagtgtatgattcacattagtttcattcaataaaagat |
50055857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 44834672 - 44834615
Alignment:
| Q |
81 |
ttatgtgtgacttatttttaaagtgtatgattcacattaattttattcaataaaagat |
138 |
Q |
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| T |
44834672 |
ttatatgtgatttatttttaacgtggaagattcacattaatttaattcaataaaagat |
44834615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 16327 - 16369
Alignment:
| Q |
93 |
tatttttaaagtgtatgattcacattaattttattcaataaaa |
135 |
Q |
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| T |
16327 |
tatttttaaagtgtaggattcacattaatttcactcaataaaa |
16369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 44402313 - 44402271
Alignment:
| Q |
93 |
tatttttaaagtgtatgattcacattaattttattcaataaaa |
135 |
Q |
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| T |
44402313 |
tatttttaaagtgtaggattcacattaatttcactcaataaaa |
44402271 |
T |
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