View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_high_3 (Length: 442)

Name: NF4515_high_3
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_high_3
NF4515_high_3
[»] chr5 (9 HSPs)
chr5 (6-422)||(12558449-12558865)
chr5 (15-413)||(9290806-9291198)
chr5 (278-422)||(9212340-9212483)
chr5 (9-197)||(12560749-12560937)
chr5 (278-422)||(35970276-35970419)
chr5 (278-422)||(9365057-9365200)
chr5 (278-351)||(9371408-9371481)
chr5 (281-422)||(9333136-9333273)
chr5 (290-349)||(9306962-9307021)
[»] chr8 (2 HSPs)
chr8 (278-422)||(31857556-31857700)
chr8 (278-351)||(44916590-44916663)
[»] chr7 (1 HSPs)
chr7 (278-422)||(6600822-6600965)
[»] chr4 (5 HSPs)
chr4 (278-364)||(38168863-38168949)
chr4 (278-364)||(40765084-40765170)
chr4 (278-364)||(40770949-40771035)
chr4 (278-364)||(40777660-40777746)
chr4 (278-364)||(37088299-37088385)
[»] chr6 (2 HSPs)
chr6 (278-349)||(24694523-24694594)
chr6 (358-422)||(24694839-24694902)


Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 6 - 422
Target Start/End: Original strand, 12558449 - 12558865
Alignment:
Q  6 atgcagatgttgatgtctactgcagaagatcaaagatccaatgcattccacctttgaagttttcacttaaagttgttaaagatatgataaacaaagtctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  12558449 atgcagatgttgatgtctactgcagaagatcaaagatccaatgcattccacctttgaagttttcacttaaagttgttcaagatatgataaacaaagtctt 12558548  T
Q  106 aaccctattaactcaaatgctaccgattctaagattaaagtttaaggaaaagagttacgagtggtgaactataagcaaattttcctagtcttgcattgct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12558549 aaccctattaactcaaatgctaccgattctaagattaaagtttaaggaaaagagttacgagtggtgaactatcagcaaattttcctagtcttgcattgct 12558648  T
Q  206 aataagagaaattagacgagtttaaggttatatnnnnnnncaggttaaccaatatttaaaaccatctttgcattgcacttgtggcaatgatgcatctagt 305  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  12558649 aataagagaaattagacgagtttaaggttatataaaaaaacaggttaaccaatatttaaaaccatctttgcattgcacttggggcaatgacgcatctagt 12558748  T
Q  306 gaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaactcaagccttcgagaattcctggaagga 405  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  12558749 gaggttctaaccgaggcgtgtctattgctggttgaaaactatttcctgatcccctcttagacttgggtccaactcaagcctttgagaattcctggaagga 12558848  T
Q  406 ttccctttggggtaaag 422  Q
    |||||||||||||||||    
T  12558849 ttccctttggggtaaag 12558865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 9291198 - 9290806
Alignment:
Q  15 ttgatgtctactgcagaagatcaaagatccaatgcattccacctttgaagttttcacttaaagttgtt-aaagatatgataaacaaagtcttaaccctat 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||||| |||||||||||||||||||||| |||||| |    
T  9291198 ttgatgtctactacagaagatcaaagatccaatgcattccacctttgaagttttcacttaggcttgttcaaagatatgataaacaaagtctgaaccctgt 9291099  T
Q  114 taactcaaatgctaccgattctaagattaaagtttaaggaaaagagttacgagtggtgaactataagcaaattttcctagtcttgcattgctaataagag 213  Q
     |||||| |||||||| |||||||| | ||| ||||||  | | | |   |||||||||  |   |||| | ||||||||||   ||| |||||||||||    
T  9291098 caactcagatgctaccaattctaagttcaaaatttaagacacaaaatggtgagtggtgacttggcagcata-tttcctagtcccacatcgctaataagag 9291000  T
Q  214 aaattagacgagtttaaggttatatnnnnnnncaggttaaccaatatttaaaaccatctttgcattgcacttgtggcaatgatgcatctagtgaggttct 313  Q
     ||||||| ||||| |  |||||||       ||| |||| | || |||||||||||||     |||| |||| |||||||| ||| ||| |||||| ||    
T  9290999 gaattagatgagttgagagttatat-aaaaagcagcttaatctatctttaaaaccatct-----ttgcgcttggggcaatgacgcagctaatgaggtact 9290906  T
Q  314 aaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaactcaagccttcgagaattcctggaaggattcccttt 413  Q
    ||||||| || ||| |||||||||||||||||||||||  | || |||||| ||| | || |||||| || ||||||||||| ||||||||| |||||||    
T  9290905 aaccgaggcgcgtcaattgctggttgaaaactatttccaaaccctctcttagactagagttcaactctagtcttcgagaatttctggaaggactcccttt 9290806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 9212483 - 9212340
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaa 377  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | ||||||||   ||||||  |||    
T  9212483 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttgggcttggg-gcaa 9212385  T
Q  378 ctcaagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  9212384 ctcaagccttcgagaatttctggaaggactccctttggggtaaag 9212340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 9 - 197
Target Start/End: Original strand, 12560749 - 12560937
Alignment:
Q  9 cagatgttgatgtctactgcagaagatcaaagatccaatgcattccacctttgaagttttcacttaaagttgttaaagatatgataaacaaagtcttaac 108  Q
    ||||| |||| ||||| |||||||||||||||||  ||| |||||||||||| ||||||||||||  | ||||| |||| |||||||||||||||||||     
T  12560749 cagattttgaagtctattgcagaagatcaaagatttaatacattccacctttaaagttttcacttggacttgtttaagacatgataaacaaagtcttaat 12560848  T
Q  109 cctattaactcaaatgctaccgattctaagattaaagtttaaggaaaagagttacgagtggtgaactataagcaaattttcctagtctt 197  Q
    | ||| |||| | |||||||| |||||||| ||||||||||| | ||||||| || ||||||||  ||   |||||||||||| |||||    
T  12560849 cttatcaactaagatgctaccaattctaagtttaaagtttaatgcaaagagtgacaagtggtgacttagccgcaaattttcctcgtctt 12560937  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 35970419 - 35970276
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaa 377  Q
    |||| |||| |||||||| ||| ||| ||||||| |||||||| || |||||||||||||||||||||||||||  | |||||||||  |||| |  |||    
T  35970419 ttgcgcttggggcaatgacgcagctaatgaggttataaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggcttgag-gcaa 35970321  T
Q  378 ctcaagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||||    
T  35970320 ctcaagccttcgagaatttctggaaggactccttttggggtaaag 35970276  T

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Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 422
Target Start/End: Original strand, 9365057 - 9365200
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatactt-gggtcca 376  Q
    |||| |||| |||||||||||| ||| |||||| ||||||||| || |||||||||||||||||||||||||||  | || ||||||  ||| ||||  |    
T  9365057 ttgcgcttggggcaatgatgcagctaatgaggtactaaccgaggcgcgtctattgctggttgaaaactatttccaaacccactcttaggcttagggt--a 9365154  T
Q  377 actcaagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
    ||| ||||||| ||||||| ||||||||| ||| ||||||||||||    
T  9365155 acttaagcctttgagaatttctggaaggactccttttggggtaaag 9365200  T

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Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 351
Target Start/End: Original strand, 9371408 - 9371481
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcc 351  Q
    |||| |||| |||||||| ||| ||| |||||| ||||||||| || |||||||||||||||||||||||||||    
T  9371408 ttgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtctattgctggttgaaaactatttcc 9371481  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 422
Target Start/End: Original strand, 9333136 - 9333273
Alignment:
Q  281 cacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaactc 380  Q
    |||||| |||||||| ||| |||||||||   |||| ||| || |||||||||||||||||||||||||||  | |||||||||  ||| ||| |||||     
T  9333136 cacttggggcaatgacgcagctagtgaggaattaactgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggctt-ggtgcaact- 9333233  T
Q  381 aagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
      |||||||||||||  |||||||| |||||||  |||||||    
T  9333234 --gccttcgagaatttttggaaggactcccttttaggtaaag 9333273  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 9306962 - 9307021
Alignment:
Q  290 caatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactattt 349  Q
    |||||||||| ||||||||||  |||||||| |  |||||||||||||||||||| ||||    
T  9306962 caatgatgcagctagtgaggtattaaccgaggcacgtctattgctggttgaaaacaattt 9307021  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 31857700 - 31857556
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaa 377  Q
    |||| |||| |||||||| ||| ||| |||||| ||||||||| || |||||||||||||||||||||||||||  | |||||||||  | || ||  ||    
T  31857700 ttgcgcttggggcaatgacgcagctaatgaggtactaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggcctgagtttaa 31857601  T
Q  378 ctcaagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
    || | || |||||||||| ||||||||| ||||||||||||||||    
T  31857600 cttaggctttcgagaatttctggaaggactccctttggggtaaag 31857556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 351
Target Start/End: Complemental strand, 44916663 - 44916590
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcc 351  Q
    |||| |||| |||||||| | | ||| ||||||  |||| ||| || |||||||||||||||||||||||||||    
T  44916663 ttgcgcttggggcaatgacgtagctaatgaggtaataactgaggcgcgtctattgctggttgaaaactatttcc 44916590  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 422
Target Start/End: Complemental strand, 6600965 - 6600822
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctcttatacttgggtccaa 377  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||  ||| ||   ||    
T  6600965 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctcttaggcttagg-gaaa 6600867  T
Q  378 ctcaagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
    || ||||||| ||||||| ||||||||| |||||| |||||||||    
T  6600866 cttaagcctttgagaatttctggaaggactcccttaggggtaaag 6600822  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Original strand, 38168863 - 38168949
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctctta 364  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||    
T  38168863 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctctta 38168949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 40765170 - 40765084
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctctta 364  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||    
T  40765170 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctctta 40765084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 40771035 - 40770949
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctctta 364  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||    
T  40771035 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctctta 40770949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 40777746 - 40777660
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctctta 364  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| || |||||||||||||||||||||||||||  | |||||||||    
T  40777746 ttgcgcttggggcaatgacgcagctaatgaggttctaaccgaggcgcgtctattgctggttgaaaactatttccaaaccccctctta 40777660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 278 - 364
Target Start/End: Complemental strand, 37088385 - 37088299
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactatttcctgatcccctctta 364  Q
    |||| |||| |||||||| ||| ||| |||||||| |||||||  | |||||||||||||||||||||||||||  | |||||||||    
T  37088385 ttgcgcttggggcaatgacgcagctaatgaggttccaaccgaggtgcgtctattgctggttgaaaactatttccaaaccccctctta 37088299  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 24694523 - 24694594
Alignment:
Q  278 ttgcacttgtggcaatgatgcatctagtgaggttctaaccgagacgtgtctattgctggttgaaaactattt 349  Q
    |||| |||| |||||||| ||| ||| |||||||||||||||| |  |||||||||||||||||||||||||    
T  24694523 ttgcgcttggggcaatgacgcaactaatgaggttctaaccgaggcacgtctattgctggttgaaaactattt 24694594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 358 - 422
Target Start/End: Original strand, 24694839 - 24694902
Alignment:
Q  358 cctcttatacttgggtccaactcaagccttcgagaattcctggaaggattccctttggggtaaag 422  Q
    ||||||| ||||||| | |||||||||||| ||||||| ||| ||||| |||||||| |||||||    
T  24694839 cctcttaaacttggggc-aactcaagcctttgagaatttctgaaaggactccctttgaggtaaag 24694902  T

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