View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_high_6 (Length: 343)
Name: NF4515_high_6
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 23 - 184
Target Start/End: Complemental strand, 19702352 - 19702184
Alignment:
| Q |
23 |
aaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattgat-----ttcaatcttttctgcatctttggtattacattatgttt |
117 |
Q |
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| T |
19702352 |
aaaagcaagaaacaatcaagttccgtgaatgttgtttctgcagtttgatgcattggttttgcttcaatcttttgtgcatctttggtattatactatgttt |
19702253 |
T |
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| Q |
118 |
gtcgaaattacaatgttct--tctttagttagtttatttgaatatcaaaattcttaattagtttagtta |
184 |
Q |
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| T |
19702252 |
gtcgaaattagagtgttcttatctttagctagtttatttgaatatcaaaattcttaattagcttagtta |
19702184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 19719151 - 19719031
Alignment:
| Q |
23 |
aaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattgatttcaatcttttctgcatctttggtattacattatgtttgtcga |
122 |
Q |
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| T |
19719151 |
aaaagcaagaaagaatcaagttttgtgcatgatgtttatgcagtttgatgcattggtttgaatcttttcggcatctttagt-----attatgtttgtcga |
19719057 |
T |
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| Q |
123 |
aattacaatgttcttctttagttagt |
148 |
Q |
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||||||| |||||||||||||||||| |
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| T |
19719056 |
aattacagtgttcttctttagttagt |
19719031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 34971688 - 34971634
Alignment:
| Q |
23 |
aaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattg |
77 |
Q |
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| T |
34971688 |
aaaagcaagaaacaatcaagttctttgcatgatgtttctgcagtttgatgcattg |
34971634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 314
Target Start/End: Complemental strand, 19718929 - 19718825
Alignment:
| Q |
216 |
tactttgattagtttttaatttggctagcatgata------tataagttgcctatcatcctttcaattccaccgaattaatagattaactcttcatattt |
309 |
Q |
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||||||||||| || |||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||| |||||||| ||||| | ||| |
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| T |
19718929 |
tactttgattatttattaatttggctagcatgatagtaatatataagttggctatcatgcttttaattccaccgaattgttagattaaatcttctttttt |
19718830 |
T |
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| Q |
310 |
tcttt |
314 |
Q |
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||||| |
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| T |
19718829 |
tcttt |
19718825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 19714013 - 19713903
Alignment:
| Q |
23 |
aaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattgatttcaatcttttctgcatctttggtattacattatgtttgtcga |
122 |
Q |
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|||||||||||| |||||| || |||||||| ||||||||| |||||||||| || || ||| |||| | ||| |||||||| | | || |||||||| |
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| T |
19714013 |
aaaagcaagaaacaatcaacttctgtgcatggtgtttctgcggtttgatgcactggctttaatgttttgtacatatttggtatcaaagta-atttgtcga |
19713915 |
T |
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| Q |
123 |
aattacaatgtt |
134 |
Q |
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|||||||||||| |
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| T |
19713914 |
aattacaatgtt |
19713903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 19702108 - 19702072
Alignment:
| Q |
216 |
tactttgattagtttttaatttggctagcatgatata |
252 |
Q |
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| T |
19702108 |
tactttgattagttattaatttggctagcatgatata |
19702072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 13028704 - 13028650
Alignment:
| Q |
23 |
aaaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattg |
77 |
Q |
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|||||||||||| ||| ||||| || ||||||||||| || |||||||||||||| |
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| T |
13028704 |
aaaagcaagaaacaatgaagttctgagcatgatgtttttgtagtttgatgcattg |
13028650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 42153998 - 42153945
Alignment:
| Q |
24 |
aaagcaagaaagaatcaagttttgtgcatgatgtttctgcagtttgatgcattg |
77 |
Q |
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|||| |||||| ||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42153998 |
aaagtaagaaacaatcaagttatgtgcatgatgtttctgcagtttgatgcattg |
42153945 |
T |
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