View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_low_1 (Length: 501)
Name: NF4515_low_1
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 276 - 491
Target Start/End: Original strand, 8450774 - 8451013
Alignment:
| Q |
276 |
atgaaacaatacatcataatctaatctaggaagggacacaaccattgaaatccaaaaacacgaggaaaaccgcattaaacacaaattaagactgccta-- |
373 |
Q |
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| T |
8450774 |
atgaaataatacatcataatctaatctatgaagggatacaaccattgaaaaccaaaaacacgaggaaaaccgcaaaaaacacaaattcagactgcccaga |
8450873 |
T |
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| Q |
374 |
-----gaacgcacctagcacccaagacagagtcagcaattcatgtatactcaataat-----------------atattattgatcaatcaacggacaag |
451 |
Q |
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| T |
8450874 |
acggcgaacgcacctagcacccaagacagagtcagcaattcatgtatactcaataataactcaagcattatagcatattattgatcaatcaacggacaag |
8450973 |
T |
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| Q |
452 |
ttatactagtattacagtttgagaccatcacaaatctctg |
491 |
Q |
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| T |
8450974 |
ttatacgagtattacagtttgagatcatcacaaatctctg |
8451013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 8450659 - 8450740
Alignment:
| Q |
46 |
atacaagatatatcattttgcacatgaaaagtaaccttttcacaaagttacaatcatatgcaatcagaattttgaatcaagag |
128 |
Q |
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| T |
8450659 |
atacaagatatatcattttgcacatgaaaagtaaccttt-cacaaagttacaatcatatgcaatcagaattttgaatcaagag |
8450740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 54076836 - 54076911
Alignment:
| Q |
209 |
ctctttctaatgcactaaggaatatagctcataaacgtatttttcaacatcaatgttgctttagtgcatgaaacaa |
284 |
Q |
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| T |
54076836 |
ctctttctactgcactaacgcatacgactcataaacgtatttttcaatatcaatgttgctttagtgcatgaaacaa |
54076911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 8450724 - 8450765
Alignment:
| Q |
149 |
gaattttgaatcaaagagatgtgtaggttcactttaagttaaa |
191 |
Q |
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| T |
8450724 |
gaattttgaatcaa-gagatgtgtaggttcacttcaagttaaa |
8450765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 13757173 - 13757248
Alignment:
| Q |
208 |
gctctttctaatgcactaaggaatatagctcataaacgtatttttcaacatcaatgttgctttagtgcatgaaaca |
283 |
Q |
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| T |
13757173 |
gctctttctactgcactaatgcatataactcataaacgtatttttcaacatcaatgttgctttagtgcatgaaaca |
13757248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 1723467 - 1723542
Alignment:
| Q |
208 |
gctctttctaatgcactaaggaatatagctcataaacgtatttttcaacatcaatgttgctttagtgcatgaaaca |
283 |
Q |
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| T |
1723467 |
gctctttctactgtactaacgcatataactcataaacgtatttttcaacatcaatgttgctttagtgcatgaaaca |
1723542 |
T |
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