View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_low_10 (Length: 338)
Name: NF4515_low_10
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 45125469 - 45125593
Alignment:
| Q |
4 |
catagggcaattcatgttgaaagatgcaacatgatgcatgcactcgtgtgtgtgcgaagattatttgagattttttaaaaagattgagttgatttatgaa |
103 |
Q |
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| T |
45125469 |
cataaggcaattcatgttgaaagatgcaacatgatgcatgcactcgtgtgtgcgcgaagattatttgagatttgttaaaaagattgagttgatttatgaa |
45125568 |
T |
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| Q |
104 |
taaaaaagtgtgagcaagaacactc |
128 |
Q |
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| T |
45125569 |
taaaaaagtgtgagcaagagcactc |
45125593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 203 - 321
Target Start/End: Original strand, 45125668 - 45125786
Alignment:
| Q |
203 |
ctctcataatatggtgggatccacatgaatttcatccaataaaaaataattggtagagagtgttcaaaatagagtatatctaacacatatcttacatcta |
302 |
Q |
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| T |
45125668 |
ctctcataaaatggtgggatccacatgaatttcatctaataaaaaatgattggtagagagtgttcaaaatatagtgtatctaacacctatcttacttcta |
45125767 |
T |
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| Q |
303 |
tattaaagttgagtcatgt |
321 |
Q |
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| T |
45125768 |
tattaaagttgagtcatgt |
45125786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 250
Target Start/End: Original strand, 6861483 - 6861512
Alignment:
| Q |
221 |
atccacatgaatttcatccaataaaaaata |
250 |
Q |
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| T |
6861483 |
atccacatgaatttcatccaataaaaaata |
6861512 |
T |
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