View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_low_11 (Length: 337)

Name: NF4515_low_11
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_low_11
NF4515_low_11
[»] chr6 (14 HSPs)
chr6 (1-192)||(33597235-33597430)
chr6 (197-330)||(33596925-33597058)
chr6 (197-330)||(11087566-11087699)
chr6 (230-317)||(16131045-16131132)
chr6 (207-312)||(12424219-12424323)
chr6 (216-330)||(20148379-20148493)
chr6 (216-330)||(22184335-22184449)
chr6 (251-300)||(16343673-16343722)
chr6 (225-312)||(34064277-34064364)
chr6 (230-312)||(19277004-19277085)
chr6 (209-317)||(22572121-22572229)
chr6 (241-300)||(18994073-18994132)
chr6 (230-300)||(27860875-27860945)
chr6 (224-312)||(12449504-12449592)
[»] chr4 (9 HSPs)
chr4 (197-330)||(2674468-2674601)
chr4 (193-300)||(29157196-29157303)
chr4 (242-330)||(12683849-12683937)
chr4 (230-312)||(1638245-1638327)
chr4 (230-312)||(14601942-14602024)
chr4 (245-313)||(5518621-5518689)
chr4 (230-312)||(15514488-15514570)
chr4 (231-300)||(15742081-15742150)
chr4 (240-312)||(25066226-25066298)
[»] chr8 (8 HSPs)
chr8 (231-330)||(21416802-21416901)
chr8 (213-334)||(18323003-18323124)
chr8 (233-312)||(4565323-4565402)
chr8 (230-312)||(24576510-24576592)
chr8 (230-317)||(13754835-13754921)
chr8 (241-300)||(16214721-16214780)
chr8 (207-317)||(5859892-5860002)
chr8 (208-300)||(20055657-20055748)
[»] chr5 (6 HSPs)
chr5 (197-317)||(32418380-32418500)
chr5 (251-311)||(24647371-24647431)
chr5 (230-312)||(22865843-22865925)
chr5 (230-312)||(18799861-18799943)
chr5 (230-312)||(31202302-31202384)
chr5 (230-294)||(24546442-24546506)
[»] chr3 (7 HSPs)
chr3 (197-312)||(25496020-25496134)
chr3 (230-312)||(12108501-12108583)
chr3 (230-309)||(1770911-1770990)
chr3 (228-299)||(13933042-13933113)
chr3 (214-330)||(16704466-16704582)
chr3 (193-317)||(20622485-20622608)
chr3 (231-312)||(20122707-20122788)
[»] chr2 (6 HSPs)
chr2 (231-310)||(18772332-18772411)
chr2 (230-312)||(29711098-29711180)
chr2 (197-330)||(3586427-3586560)
chr2 (230-312)||(24157233-24157315)
chr2 (208-312)||(19290549-19290651)
chr2 (275-334)||(24499849-24499908)
[»] scaffold0543 (1 HSPs)
scaffold0543 (224-304)||(4869-4949)
[»] scaffold0492 (1 HSPs)
scaffold0492 (224-304)||(6415-6495)
[»] scaffold0054 (1 HSPs)
scaffold0054 (207-330)||(68706-68829)
[»] chr7 (7 HSPs)
chr7 (230-309)||(16987019-16987098)
chr7 (230-313)||(12265052-12265135)
chr7 (230-312)||(13292050-13292132)
chr7 (230-330)||(43171963-43172063)
chr7 (207-309)||(5925380-5925481)
chr7 (231-312)||(20034397-20034478)
chr7 (232-300)||(1979156-1979224)
[»] chr1 (4 HSPs)
chr1 (230-312)||(14254969-14255051)
chr1 (230-311)||(12177469-12177550)
chr1 (230-312)||(23728747-23728829)
chr1 (231-300)||(3590921-3590990)
[»] scaffold0291 (1 HSPs)
scaffold0291 (208-291)||(8486-8569)
[»] scaffold0294 (1 HSPs)
scaffold0294 (230-312)||(169-251)
[»] scaffold0005 (1 HSPs)
scaffold0005 (230-312)||(215354-215436)
[»] scaffold0103 (1 HSPs)
scaffold0103 (231-312)||(40878-40959)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 33597430 - 33597235
Alignment:
Q  1 agttccttttaaaatattcacaatcttaaatgaccttttgaaagcgtcctatgaaatcaataacaaatttgatagtttact-ttttcttaatatactaat 99  Q
    |||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  33597430 agttccttttaaaatatttacaatcttaaaagaccttttgtaagcgtcctatgaaatcaataacaaatttgatagtttactttttttttaatatactaat 33597331  T
Q  100 tacctt-aaaaaatgacaatattcaaattttaggttcacatctcgttt--tatatattttgttttcgtcttgtaatgatttacctttgaattttta 192  Q
    ||| || ||||||||||| ||||||||||||||||||||||||| |||  |||||||||| ||||||||||||| ||||||||| |||||||||||    
T  33597330 tacgttaaaaaaatgacattattcaaattttaggttcacatctccttttatatatatttttttttcgtcttgtattgatttaccattgaattttta 33597235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 33597058 - 33596925
Alignment:
Q  197 gagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgc 296  Q
    ||||||||||||||| ||||||| |||||||| ||||||| | |||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||    
T  33597058 gagggtcatcctacatgtgtcctctaaccgcccctaatcatacgccgcataatccggtgacaattatgctcaaagcgcgcctatataagagtgaacttgc 33596959  T
Q  297 ttcatccttaaggtacgattccattttctcaaca 330  Q
    |||||||| |||||| |||||||||||| |||||    
T  33596958 ttcatcctcaaggtatgattccattttcacaaca 33596925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 11087699 - 11087566
Alignment:
Q  197 gagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgc 296  Q
    |||| ||| |||||||||||||| |||||| |  |||| ||| |||||||||||||||||||||||||||||| |||  |||||||||| |||||||||     
T  11087699 gaggatcaccctacacgtgtcctctaaccgtccttaattacacgccgcataatccggagacagttatgctcaacgcgcacctatataagggtgaacttgt 11087600  T
Q  297 ttcatccttaaggtacgattccattttctcaaca 330  Q
    |||||||| |||||| |||||  ||||| |||||    
T  11087599 ttcatcctcaaggtatgattcacttttcacaaca 11087566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 16131132 - 16131045
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgattc 317  Q
    ||||||||||||| ||||||||||||||||||||||| || ||| ||||||||||| || |||||| |||| ||| |||||| |||||    
T  16131132 ctaatcacatgccacataatccggagacagttatgcttaatgcgcgcctatataagggtaaacttgtttcaccctcaaggtatgattc 16131045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 207 - 312
Target Start/End: Original strand, 12424219 - 12424323
Alignment:
Q  207 ctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaa-agcgtgcctatataagagtgaacttgcttcatcctt 305  Q
    ||||||||||||| |  |||| |||||||||||||||||||| |||||||| |||||| |||  |||| ||||||||||| |||||||||||||| ||||    
T  12424219 ctacacgtgtcctttc-ccgcttctaatcacatgccgcataacccggagacggttatg-tcacgagcgcgcctatataagggtgaacttgcttcaccctt 12424316  T
Q  306 aaggtac 312  Q
    |||||||    
T  12424317 aaggtac 12424323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 330
Target Start/End: Complemental strand, 20148493 - 20148379
Alignment:
Q  216 tcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgat 315  Q
    ||||||||||  | ||||| |||||||||  || |||||| ||||||| ||||| ||||||||||||||| |||| ||||||||| | | |||||| |||    
T  20148493 tcctataaccaaccctaatgacatgccgcgaaacccggaggcagttattctcaacgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgat 20148394  T
Q  316 tccattttctcaaca 330  Q
    ||  ||||| |||||    
T  20148393 tcacttttcacaaca 20148379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 330
Target Start/End: Original strand, 22184335 - 22184449
Alignment:
Q  216 tcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgat 315  Q
    ||||||||||  | ||||| |||||||||  || |||||| ||||||| ||||| ||||||||||||||| |||| ||||||||| | | |||||| |||    
T  22184335 tcctataaccaaccctaatgacatgccgcgaaacccggaggcagttattctcaacgcgtgcctatataagggtgaccttgcttcaccatcaaggtatgat 22184434  T
Q  316 tccattttctcaaca 330  Q
    ||  ||||| |||||    
T  22184435 tcacttttcacaaca 22184449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Complemental strand, 16343722 - 16343673
Alignment:
Q  251 cggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||||||||    
T  16343722 cggagacggttatgctcaacgcgtgcctatataagtgtgaacttgcttca 16343673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 312
Target Start/End: Complemental strand, 34064364 - 34064277
Alignment:
Q  225 cgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||| |||||||| |||||||||| |||| ||| ||||||  |||  || ||||||||||| |||||||||||||| ||| |||||||    
T  34064364 cgcccctaatcacgtgccgcataacccggtgacggttatggccaactcgcgcctatataagggtgaacttgcttcaccctcaaggtac 34064277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 19277004 - 19277085
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||| | ||||||||| || ||||| ||||||  ||||||| ||||||||||| |||||||||||||| ||| |||||||    
T  19277004 ctaatcatacgccgcataa-ccagagacggttatgaccaaagcgcgcctatataagggtgaacttgcttcaccctcaaggtac 19277085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 22572229 - 22572121
Alignment:
Q  209 acacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaag 308  Q
    ||||||||||| |||||| | ||||||| |   ||||||| | |||||| ||||||||||| ||| ||| ||||||  |||||||||||||| ||| |||    
T  22572229 acacgtgtcctctaaccgtccctaatcatacttcgcataacctggagacggttatgctcaacgcgcgccaatataaaggtgaacttgcttcaccctcaag 22572130  T
Q  309 gtacgattc 317  Q
     || |||||    
T  22572129 atatgattc 22572121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 18994132 - 18994073
Alignment:
Q  241 ccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    |||||||||| |||||| |||||||   ||||| ||||||||||| ||||||||||||||    
T  18994132 ccgcataatctggagacggttatgccacaagcgcgcctatataagggtgaacttgcttca 18994073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 27860875 - 27860945
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    ||||||||| ||||||||| |||||||| ||||||  |||  || ||||||| ||| ||||||||||||||    
T  27860875 ctaatcacacgccgcataacccggagacggttatggccaacacgcgcctataaaagggtgaacttgcttca 27860945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 12449504 - 12449592
Alignment:
Q  224 ccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||| |||||||||  | |||||| | |||||||||||||  ||| ||| ||||||||||| || |||||| |||| ||| |||||||    
T  12449504 ccgcccctaatcacacactgcataacctggagacagttatgaccaacgcgcgcctatataagggtaaacttgattcaccctcaaggtac 12449592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 197 - 330
Target Start/End: Original strand, 2674468 - 2674601
Alignment:
Q  197 gagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgc 296  Q
    |||| ||| |||||||||||||| |||| | | ||||||||| |||||| ||||||||||| ||||||||||| ||| || |||||||| |||||||| |    
T  2674468 gaggatcaccctacacgtgtcctctaactgtccctaatcacacgccgcaaaatccggagacggttatgctcaacgcgcgcttatataagggtgaacttac 2674567  T
Q  297 ttcatccttaaggtacgattccattttctcaaca 330  Q
    |||||||| |||||| |||||  ||||| |||||    
T  2674568 ttcatcctcaaggtatgattcacttttcacaaca 2674601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 193 - 300
Target Start/End: Complemental strand, 29157303 - 29157196
Alignment:
Q  193 gcgtgagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaac 292  Q
    |||||||| |||||||||| ||||||| |||||| | |||||||   ||||||||| || ||||| ||||| ||| | ||| ||||||||||| ||||||    
T  29157303 gcgtgaggatcatcctacatgtgtcctctaaccgtccctaatcattagccgcataacccagagacggttatcctctacgcgcgcctatataagggtgaac 29157204  T
Q  293 ttgcttca 300  Q
    || |||||    
T  29157203 ttacttca 29157196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 242 - 330
Target Start/End: Complemental strand, 12683937 - 12683849
Alignment:
Q  242 cgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgattccattttctcaaca 330  Q
    |||||||  ||||||| |||||||| || ||| ||||| ||||| |||||||||||||| |||||||||| |||||  ||||| |||||    
T  12683937 cgcataactcggagacggttatgcttaatgcgcgcctagataagggtgaacttgcttcacccttaaggtatgattcacttttcacaaca 12683849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 1638245 - 1638327
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||| ||||||||||| |||||||| |||||||    ||||  |||||||||| |||||||||||||| ||| |||||||    
T  1638245 ctaatcatatgccgcataacccggagacggttatgccacgagcgcacctatataagggtgaacttgcttcaccctcaaggtac 1638327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 14601942 - 14602024
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| ||||||||| ||||||||||||||| ||||  |  | |||||||||  ||||||||||||| ||| |||||||    
T  14601942 ctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaaggtac 14602024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 5518689 - 5518621
Alignment:
Q  245 ataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacg 313  Q
    |||| |||||||| ||||||| |||  || ||||||||||| |||||||||||||| ||| ||||||||    
T  5518689 ataacccggagacggttatgcccaacacgcgcctatataagggtgaacttgcttcaccctcaaggtacg 5518621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 15514488 - 15514570
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||| ||||||||||| | |||||  ||||||  ||  ||| ||||||||||| |||||||||||||| ||| |||||||    
T  15514488 ctaatcatatgccgcataacctggagatggttatgaccagggcgagcctatataagggtgaacttgcttcaccctcaaggtac 15514570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 15742081 - 15742150
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    |||||||| ||||||||| |||||||| ||||||  |||  || ||||||||||| ||||| ||||||||    
T  15742081 taatcacacgccgcataacccggagacggttatggccaacacgcgcctatataagggtgaatttgcttca 15742150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 312
Target Start/End: Complemental strand, 25066298 - 25066226
Alignment:
Q  240 gccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| || ||||| |||||||   ||||| ||||||||||| || ||||||||||| ||| |||||||    
T  25066298 gccgcataacccagagacggttatgccacaagcgcgcctatataagggtaaacttgcttcaacctcaaggtac 25066226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 21416901 - 21416802
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgattccattttctcaaca 330  Q
    |||||||| ||||||||| |||||||| ||||||| ||| |||  |||||| ||| |||||||||||||| ||||||||||||||||  ||||| |||||    
T  21416901 taatcacaggccgcataacccggagacggttatgcccaacgcgcccctatacaagggtgaacttgcttcacccttaaggtacgattcatttttcacaaca 21416802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 18323124 - 18323003
Alignment:
Q  213 gtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||| |||||  | ||||||||| |||||  || |||||| ||||||| |||||  | |||||||||||| |||| ||||||||||||| || |||     
T  18323124 gtgtcctctaaccatccctaatcacacgccgcgaaacccggaggcagttattctcaactcttgcctatataagggtgaccttgcttcatcctcaatgtat 18323025  T
Q  313 gattccattttctcaacatttt 334  Q
    |||||  ||||| |||||||||    
T  18323024 gattcacttttcacaacatttt 18323003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 233 - 312
Target Start/End: Original strand, 4565323 - 4565402
Alignment:
Q  233 atcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||| ||||||||| ||||||||||||||||    |||| || |||||||| |||||||||||||| ||| |||||||    
T  4565323 atcacacgccgcataacccggagacagttatgccacgagcgcgcttatataagggtgaacttgcttcaccctcaaggtac 4565402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 24576510 - 24576592
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| | ||||||| | |||| | |||||| |||| ||||||||||||||| |||||||| ||||| ||| |||||||    
T  24576510 ctaatcacacgtcgcataacctggaggcggttatgatcaacgcgtgcctatataagggtgaacttccttcaccctcaaggtac 24576592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 317
Target Start/End: Complemental strand, 13754921 - 13754835
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgattc 317  Q
    ||||||||| |||||| |||||| |||| ||||| ||||  ||||||||||||||||||||  | |||||| ||| |||||| |||||    
T  13754921 ctaatcacacgccgcaaaatccgaagacggttattctcat-gcgtgcctatataagagtgacttagcttcaccctcaaggtaggattc 13754835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 16214780 - 16214721
Alignment:
Q  241 ccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    |||||||| |||||||| |||||||   ||||| ||||||||||| ||||||||||||||    
T  16214780 ccgcataacccggagacggttatgccacaagcgcgcctatataagggtgaacttgcttca 16214721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 317
Target Start/End: Complemental strand, 5860002 - 5859892
Alignment:
Q  207 ctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatcctta 306  Q
    ||||||||||| | |||||| | ||||||||  |||||| ||||| ||| | |||||   ||| ||| ||||||||||| |||| |||||||||  || |    
T  5860002 ctacacgtgtcatttaaccgtccctaatcactcgccgcaaaatccagaggcggttatttccaacgcgcgcctatataagggtgaccttgcttcaatctca 5859903  T
Q  307 aggtacgattc 317  Q
    |||||||||||    
T  5859902 aggtacgattc 5859892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 300
Target Start/End: Complemental strand, 20055748 - 20055657
Alignment:
Q  208 tacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    ||||||||||| ||||||||| ||||||| |  ||||||    ||||||  ||||||||||| ||| |||||||||||  |||||||||||||    
T  20055748 tacacgtgtcccataaccgcc-ctaatcataccccgcatctcacggagatggttatgctcaaggcgcgcctatataaggatgaacttgcttca 20055657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 317
Target Start/End: Original strand, 32418380 - 32418500
Alignment:
Q  197 gagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgc 296  Q
    |||| ||| |||||||||||||  |||||  | ||||||||| ||||||||| ||||||||||||| ||| || ||  | ||||| ||| ||||||||||    
T  32418380 gaggatcaccctacacgtgtcccctaaccatccctaatcacacgccgcataacccggagacagttaagcttaacgcacgtctatacaagggtgaacttgc 32418479  T
Q  297 ttcatccttaaggtacgattc 317  Q
    |||||||| |||||| |||||    
T  32418480 ttcatcctcaaggtatgattc 32418500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 24647431 - 24647371
Alignment:
Q  251 cggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggta 311  Q
    |||||||| ||||| || ||||| ||||||||||| |||||||||||||| ||||||||||    
T  24647431 cggagacaattatgatccaagcgcgcctatataagggtgaacttgcttcacccttaaggta 24647371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 22865925 - 22865843
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| | ||||||||||||| || ||||||  ||| ||  ||||||||||| |||||||||||||| ||| |||||||    
T  22865925 ctaatcacaagtcgcataatccggaaacggttatggccaacgcacgcctatataagggtgaacttgcttcaccctcaaggtac 22865843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 18799943 - 18799861
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| ||| ||||| || ||||| |||||||    |||| ||||||||||| |||||||||||||||| | |||||||    
T  18799943 ctaatcacacgccacataacccagagacggttatgcctcgagcgcgcctatataagggtgaacttgcttcatcatcaaggtac 18799861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 31202302 - 31202384
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| ||||||||| |  ||||| ||||||  ||| | | ||||||||||| |||||||||||||| ||| |||||||    
T  31202302 ctaatcacacgccgcataacctagagacggttatgaccaacgtgcgcctatataagggtgaacttgcttcaccctcaaggtac 31202384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 294
Target Start/End: Complemental strand, 24546506 - 24546442
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaactt 294  Q
    ||||||||| ||||||||| |||||||| ||||||   || ||| ||||||||||| ||||||||    
T  24546506 ctaatcacacgccgcataacccggagacggttatggctaacgcgcgcctatataagggtgaactt 24546442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 312
Target Start/End: Complemental strand, 25496134 - 25496020
Alignment:
Q  197 gagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgc 296  Q
    |||| |||||| |||||||||||| | |||   ||||||||| ||||||||| |||||||| |||||| |||| | | ||||||||||| ||||||||||    
T  25496134 gaggatcatccaacacgtgtcctaca-ccgttcctaatcacacgccgcataacccggagacggttatgatcaacgtgcgcctatataagggtgaacttgc 25496036  T
Q  297 ttcatccttaaggtac 312  Q
    |||| | |||||||||    
T  25496035 ttcacctttaaggtac 25496020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 12108583 - 12108501
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| ||||||||| |||||| | ||||||  ||| ||||||||||||||| |||||||||||||| ||| |||||||    
T  12108583 ctaatcacaagccgcataacccggaggccgttatgaccaacgcgtgcctatataagggtgaacttgcttcaccctcaaggtac 12108501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 309
Target Start/End: Complemental strand, 1770990 - 1770911
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaagg 309  Q
    ||||||| | |||||||||| ||||||| ||||||| ||| |||  |||||||||| | |||||||||||||||| ||||    
T  1770990 ctaatcatacgccgcataattcggagacggttatgcacaacgcgcacctatataagggcgaacttgcttcatcctcaagg 1770911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 299
Target Start/End: Complemental strand, 13933113 - 13933042
Alignment:
Q  228 ctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttc 299  Q
    ||||||||||| |||||||||||| ||||  |||||| | || ||| | |||||||||||||||||||||||    
T  13933113 ctctaatcacacgccgcataatccagagatggttatgttgaacgcgcgtctatataagagtgaacttgcttc 13933042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 330
Target Start/End: Complemental strand, 16704582 - 16704466
Alignment:
Q  214 tgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacg 313  Q
    |||||| |||||| |||||||||||    ||| ||||||||| | |||||   ||| ||| ||||||||||| |||||||||||||| ||| |||||| |    
T  16704582 tgtcctctaaccgtctctaatcacacatagcaaaatccggaggcggttatcaccaacgcgcgcctatataagggtgaacttgcttcaccctcaaggtatg 16704483  T
Q  314 attccattttctcaaca 330  Q
    ||||  ||||| |||||    
T  16704482 attcacttttcacaaca 16704466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 317
Target Start/End: Complemental strand, 20622608 - 20622485
Alignment:
Q  193 gcgtgagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaac 292  Q
    |||||||| ||| |||||||||||||| || | || |||||||||| | | ||||| ||  |||| ||||||| |||  | ||| |||||||| ||||||    
T  20622608 gcgtgaggatcaccctacacgtgtcctttatc-gcttctaatcacacgtcacataacccaaagacggttatgcccaacacatgcatatataagggtgaac 20622510  T
Q  293 ttgcttcatccttaaggtacgattc 317  Q
    |||||||| ||| |||||| |||||    
T  20622509 ttgcttcaccctcaaggtatgattc 20622485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 20122707 - 20122788
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||| | ||||||||| |||||||| ||||| |   ||||| ||||||||||| |||||||| ||||| ||| |||||||    
T  20122707 taatcatacgccgcataacccggagacggttattccataagcgcgcctatataagggtgaactttcttcaccctcaaggtac 20122788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 310
Target Start/End: Complemental strand, 18772411 - 18772332
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggt 310  Q
    |||||||| |||||||||||||||||||||||||  ||| | ||| ||||||||| |||||||||||||| ||| |||||    
T  18772411 taatcacacgccgcataatccggagacagttatgaccaacgtgtgtctatataagggtgaacttgcttcaccctcaaggt 18772332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 29711180 - 29711098
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||||||||||||||||  ||||||| |||| || ||| ||| ||||||||||| |||||||||||||| ||| |||||||    
T  29711180 ctaatcacatgccgcataacacggagacggttaagcccaatgcgcgcctatataagggtgaacttgcttcaccctcaaggtac 29711098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 330
Target Start/End: Complemental strand, 3586560 - 3586427
Alignment:
Q  197 gagggtcatcctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgc 296  Q
    |||| |||||||||| ||||||| |||||| | ||| ||||| ||||||||| |  ||  | ||||||  ||| ||| ||||||||||| ||||||||||    
T  3586560 gaggatcatcctacatgtgtcctctaaccgtccctattcacacgccgcataaccaagaagcggttatgaccaacgcgcgcctatataagggtgaacttgc 3586461  T
Q  297 ttcatccttaaggtacgattccattttctcaaca 330  Q
    |||| ||| |||||| |||||  ||||| |||||    
T  3586460 ttcaccctcaaggtatgattcacttttcacaaca 3586427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 24157233 - 24157315
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||||||| |||||||| ||||||||||||| |  |||  || || |||||||| |||||||||||||| ||| |||||||    
T  24157233 ctaatcacataccgcataacccggagacagttagggccaacacgcgcttatataagggtgaacttgcttcaccctcaaggtac 24157315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 208 - 312
Target Start/End: Complemental strand, 19290651 - 19290549
Alignment:
Q  208 tacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaa 307  Q
    |||||||||||| |  |||| |||||||| | || |||||| |||||||| ||||||  | |||||   ||||||||| |||||||||||||| ||||||    
T  19290651 tacacgtgtccttt--ccgcttctaatcatacgctgcataacccggagacggttatgacccaagcgcatctatataagggtgaacttgcttcacccttaa 19290554  T
Q  308 ggtac 312  Q
    |||||    
T  19290553 ggtac 19290549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 334
Target Start/End: Complemental strand, 24499908 - 24499849
Alignment:
Q  275 gcctatataagagtgaacttgcttcatccttaaggtacgattccattttctcaacatttt 334  Q
    |||| |||||| |||||||||||||| |||||||||| |||||  ||||| |||||||||    
T  24499908 gcctttataagggtgaacttgcttcacccttaaggtatgattcacttttcacaacatttt 24499849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 4869 - 4949
Alignment:
Q  224 ccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatcct 304  Q
    |||| ||||||||||||||||||||  |||||||| ||||||   |||||  |||||||||||||||| ||||||||||||    
T  4869 ccgcttctaatcacatgccgcataaatcggagacaattatgccacaagcgaacctatataagagtgaatttgcttcatcct 4949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 6415 - 6495
Alignment:
Q  224 ccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatcct 304  Q
    |||| ||||||||||||||||||||  |||||||| ||||||   |||||  |||||||||||||||| ||||||||||||    
T  6415 ccgcttctaatcacatgccgcataaatcggagacaattatgccacaagcgaacctatataagagtgaatttgcttcatcct 6495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 330
Target Start/End: Original strand, 68706 - 68829
Alignment:
Q  207 ctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatcctta 306  Q
    |||| ||||||||||||||    |||||||||||||||  || || ||| ||||||| ||||| ||||||||||||||| |||| ||||||||  ||| |    
T  68706 ctacgcgtgtcctataaccaatcctaatcacatgccgcgaaacccagaggcagttattctcaacgcgtgcctatataagggtgaccttgcttctccctca 68805  T
Q  307 aggtacgattccattttctcaaca 330  Q
    ||||| |||||  ||||| |||||    
T  68806 aggtatgattcacttttcacaaca 68829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 16987019 - 16987098
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaagg 309  Q
    |||||||||  ||||||||||||||||| ||||||  ||| ||| ||||||||||| |||||||||||||| | ||||||    
T  16987019 ctaatcacacaccgcataatccggagacggttatggccaacgcgcgcctatataagggtgaacttgcttcacctttaagg 16987098  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 313
Target Start/End: Original strand, 12265052 - 12265135
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacg 313  Q
    ||||||| | ||||||||| |||||||  ||||||||   |||||||||||||||| |||||||||||| | ||| ||||||||    
T  12265052 ctaatcatacgccgcataacccggagatggttatgcttcgagcgtgcctatataagggtgaacttgcttgaccctcaaggtacg 12265135  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 13292050 - 13292132
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||| |||| ||||||||| |||||||| ||||||  ||| ||| ||||||||||  |||||||||||||| ||| |||||||    
T  13292050 ctaaccacacgccgcataacccggagacggttatggccaacgcgcgcctatataatggtgaacttgcttcaccctcaaggtac 13292132  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 43171963 - 43172063
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtacgattccattttctcaac 329  Q
    ||||||| |||||||| || |||||| ||||||| |||||  || ||||||||||| ||||| |||||||| ||| || ||| |||||  ||||| ||||    
T  43171963 ctaatcaaatgccgcaaaacccggaggcagttattctcaatccgcgcctatataagggtgaagttgcttcaccctcaatgtatgattcacttttcacaac 43172062  T
Q  330 a 330  Q
    |    
T  43172063 a 43172063  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 309
Target Start/End: Original strand, 5925380 - 5925481
Alignment:
Q  207 ctacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatcctta 306  Q
    ||||||||||||| |  |||||||  |||||| ||||||||| |||||||| |||||||    |||| ||||| ||||| |||||||||||||| ||| |    
T  5925380 ctacacgtgtcctttt-ccgcctcagatcacacgccgcataacccggagacggttatgccacgagcgcgcctacataagggtgaacttgcttcaccctca 5925478  T
Q  307 agg 309  Q
    |||    
T  5925479 agg 5925481  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 20034478 - 20034397
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||| ||||||||||| |||||||| || ||||  | |||| ||||||||||| ||| |||||||| | ||| |||||||    
T  20034478 taatcatatgccgcataacccggagacggtcatgccaagagcgggcctatataagggtgtacttgctttaccctcaaggtac 20034397  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 300
Target Start/End: Complemental strand, 1979224 - 1979156
Alignment:
Q  232 aatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    ||||||| ||||||||| ||| |||| |||||||    |||||||||||||||  ||||||||||||||    
T  1979224 aatcacacgccgcataacccgcagacggttatgccacgagcgtgcctatataaaggtgaacttgcttca 1979156  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 14254969 - 14255051
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||| | ||||||||| | ||||| |||||||  ||||||||||||||||||| ||||||||| |||| ||| |||||||    
T  14254969 ctaatcatacgccgcataacctggagaaagttatgaccaaagcgtgcctatataagggtgaacttgtttcaccctcaaggtac 14255051  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 311
Target Start/End: Complemental strand, 12177550 - 12177469
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggta 311  Q
    ||||||| |||||||||||  ||||||||||||||| ||| |||  ||||||||||  |||||||||||| |||| ||||||    
T  12177550 ctaatcaaatgccgcataactcggagacagttatgcccaatgcgcacctatataaggttgaacttgcttcctcctcaaggta 12177469  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 23728747 - 23728829
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||||||||||||||  | |||| ||||||  ||| | | ||||||||||| ||||||||| |||| ||| |||||||    
T  23728747 ctaatcacatgccgcataatttgaagacggttatggccaacgtgcgcctatataagggtgaacttgtttcaccctcaaggtac 23728829  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 3590990 - 3590921
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttca 300  Q
    |||||| | ||||||||| |||||||| |||||||  | || | ||||||||||| ||||||||||||||    
T  3590990 taatcatacgccgcataacccggagacggttatgccaagagtgcgcctatataagggtgaacttgcttca 3590921  T

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Target: scaffold0291 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 8486 - 8569
Alignment:
Q  208 tacacgtgtcctataaccgcctctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaa 291  Q
    |||||||||| | |||||  ||||||||| | || |||||| |||||||| ||||||||||| ||| ||||||||||| |||||    
T  8486 tacacgtgtcatctaaccttctctaatcaaacgctgcataacccggagacggttatgctcaacgcgcgcctatataagggtgaa 8569  T

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Target: scaffold0294 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 169 - 251
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||||||  | |||||| |||||||||||||||  ||| ||| ||||| ||||| |||||||||||||| ||| |||||||    
T  169 ctaatcacacactgcataacccggagacagttatgaccaacgcgcgcctagataagggtgaacttgcttcaccctcaaggtac 251  T

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Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 312
Target Start/End: Complemental strand, 215436 - 215354
Alignment:
Q  230 ctaatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    ||||||||| ||||||||| ||||||||||||||| ||||  |  | |||||||||  ||||||||||||| ||| |||||||    
T  215436 ctaatcacacgccgcataacccggagacagttatgatcaacacacggctatataaggatgaacttgcttcaccctcaaggtac 215354  T

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Target: scaffold0103 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 312
Target Start/End: Complemental strand, 40959 - 40878
Alignment:
Q  231 taatcacatgccgcataatccggagacagttatgctcaaagcgtgcctatataagagtgaacttgcttcatccttaaggtac 312  Q
    |||||||||||||||||| |||||||| ||||||  ||  ||  ||||||| ||| |||||||||||||| ||| |||||||    
T  40959 taatcacatgccgcataacccggagacggttatgaccagcgcacgcctataaaagggtgaacttgcttcaccctcaaggtac 40878  T

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