View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_low_12 (Length: 328)

Name: NF4515_low_12
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_low_12
NF4515_low_12
[»] chr3 (13 HSPs)
chr3 (18-322)||(5299384-5299688)
chr3 (68-307)||(5250872-5251111)
chr3 (28-289)||(5268719-5268980)
chr3 (28-180)||(4388151-4388303)
chr3 (221-317)||(8455513-8455609)
chr3 (221-317)||(6736849-6736945)
chr3 (221-317)||(8590588-8590684)
chr3 (222-322)||(6479051-6479151)
chr3 (221-317)||(6553512-6553608)
chr3 (221-307)||(6519246-6519332)
chr3 (219-297)||(5281508-5281586)
chr3 (221-286)||(6948128-6948193)
chr3 (220-316)||(6837991-6838087)
[»] scaffold0425 (1 HSPs)
scaffold0425 (221-317)||(6551-6647)
[»] chr7 (1 HSPs)
chr7 (219-316)||(6572403-6572500)


Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 322
Target Start/End: Original strand, 5299384 - 5299688
Alignment:
Q  18 caaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299384 caaccgacttcaccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttga 5299483  T
Q  118 tcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggt 217  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5299484 tcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggt 5299583  T
Q  218 tgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgct 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5299584 tgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctccgct 5299683  T
Q  318 ccttc 322  Q
     ||||    
T  5299684 tcttc 5299688  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 68 - 307
Target Start/End: Original strand, 5250872 - 5251111
Alignment:
Q  68 catatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtaaacgatgaaaagaagtcgaataccttg 167  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||| |||| ||| || ||||||||||||||||||||||||    
T  5250872 catatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaagaagtcgaataccttg 5250971  T
Q  168 ctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagat 267  Q
    ||||||||||||||||| ||| |||||||||||||   |||||  |  |||||||||||||| || || || ||  | |||||  ||  |||||||||||    
T  5250972 ctagtagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagat 5251071  T
Q  268 caccaagccacttcttcacgtatgagctttggtattgctt 307  Q
    || |||||||||||||||||||   |||||||||||||||    
T  5251072 catcaagccacttcttcacgtacatgctttggtattgctt 5251111  T

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Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 28 - 289
Target Start/End: Original strand, 5268719 - 5268980
Alignment:
Q  28 caccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactc 127  Q
    |||||||| |||||||||||   ||||||||||| || | ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  5268719 caccttcactactagcacaagcgtcttgttttaatccaagcatatgcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactc 5268818  T
Q  128 aaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctca 227  Q
    ||| |||| ||| || || |||| ||||||||||||||||||||||||||||||||| |||| |||| |||||||   |||||| |  ||||||||||||    
T  5268819 aaatggattagtgaaagacgaaatgaagtcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctca 5268918  T
Q  228 tccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgta 289  Q
    || || || || ||  | |||||  ||  ||||||||||||| |||||||||||||||||||    
T  5268919 tctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgta 5268980  T

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Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 28 - 180
Target Start/End: Complemental strand, 4388303 - 4388151
Alignment:
Q  28 caccttcattactagcacaaatttcttgttttaaccctaacatatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactc 127  Q
    |||||||| ||||||||||  | |||||||| |  || | ||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||    
T  4388303 caccttcactactagcacaggtgtcttgtttcagtccgagcatatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattc 4388204  T
Q  128 aaagggatcagtaaacgatgaaaagaagtcgaataccttgctagtagaaggtt 180  Q
    ||| |||| | | || ||||||||||||| |||||||||||||||||||||||    
T  4388203 aaatggattaatgaaagatgaaaagaagttgaataccttgctagtagaaggtt 4388151  T

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Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 8455513 - 8455609
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgct 317  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||  | ||||||| |||||| ||||||||    
T  8455513 aatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 8455609  T

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Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 6736849 - 6736945
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgct 317  Q
    |||||||||||| ||||| ||||||||||| | |||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| ||||||||    
T  6736849 aatctcatccaatagttggtctgcttcataaagaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6736945  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 8590588 - 8590684
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgct 317  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  |||| |||| |||||| ||||||||    
T  8590588 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgcttcggtactgctttatctctgct 8590684  T

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Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 322
Target Start/End: Complemental strand, 6479151 - 6479051
Alignment:
Q  222 atctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgctcctt 321  Q
    |||||||| || ||||| ||||||||||| |||||||||||||| | | |||||||||||||||| |||  | ||||||| |||||| |||||||| |||    
T  6479151 atctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttcttcacatatatgatttggtactgctttatctctgcttctt 6479052  T
Q  322 c 322  Q
    |    
T  6479051 c 6479051  T

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Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 6553608 - 6553512
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgct 317  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| ||||||||    
T  6553608 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6553512  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 221 - 307
Target Start/End: Complemental strand, 6519332 - 6519246
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctt 307  Q
    ||||||||| || ||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||    
T  6519332 aatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctt 6519246  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 219 - 297
Target Start/End: Original strand, 5281508 - 5281586
Alignment:
Q  219 gcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagcttt 297  Q
    ||||||||||| |||| ||| ||||| ||||| ||| |||||||||||||| ||||||||||||| || |||| |||||    
T  5281508 gcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttctttacatatgtgcttt 5281586  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 221 - 286
Target Start/End: Original strand, 6948128 - 6948193
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcac 286  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| ||||||||||||||||    
T  6948128 aatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttcttcac 6948193  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 6838087 - 6837991
Alignment:
Q  220 caatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgc 316  Q
    ||||||||||||| | ||||||| ||||||| ||  ||||||| |||| | ||| |||||||||||| | |  | ||||||| | ||||||||||||    
T  6838087 caatctcatccaacaattgatctacttcatatacctcatgttttagattatcaaaccacttcttcacattttggttttggtacttctttgtctctgc 6837991  T

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Target: scaffold0425 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 221 - 317
Target Start/End: Complemental strand, 6647 - 6551
Alignment:
Q  221 aatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgct 317  Q
    ||||||||| || ||||| ||||| ||||| |||||||||||||| ||| |||||||||||||||| |||  | ||||||| |||||| ||||||||    
T  6647 aatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgct 6551  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 6572500 - 6572403
Alignment:
Q  219 gcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagatcaccaagccacttcttcacgtatgagctttggtattgctttgtctctgc 316  Q
    |||||||||||||| | ||||||| ||||||| ||  ||||||| |||  | |||||||  ||||||||| || | ||||||| || |||||||||||    
T  6572500 gcaatctcatccaacaattgatctacttcatatacctcatgttttagacgatcaagccaaatcttcacgtttgggttttggtactgttttgtctctgc 6572403  T

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