View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_low_16 (Length: 280)
Name: NF4515_low_16
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 6156371 - 6156622
Alignment:
| Q |
19 |
agttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcgatagataacagacggttcagcattacaatggagatactcaagacccc |
118 |
Q |
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| T |
6156371 |
agttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcgatagataacagacggttcagcattacaatggagatactcaagacccc |
6156470 |
T |
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| Q |
119 |
gagctgctccaacagcaatcttcattcgagatctccagcttagaggttctttgtctcgggtaagatctgaaatgagaaatatgttatgatctctnnnnnn |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6156471 |
gagctgctccaacagcaatcttcattcgagatctccagcttagaggttctttgtctcgggtaagatctgaaatgagaaataagttatgatcttaaaaaaa |
6156570 |
T |
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| Q |
219 |
ncttcatctctttctttagggatacaaaaatctttcgaggcatagtctcatt |
270 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
6156571 |
acttcatctctttctttagggatacaaaaatatttcgaggcatagtctcatt |
6156622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 54032047 - 54032238
Alignment:
| Q |
19 |
agttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcgatagataacagacggttcagcattacaatggagatactcaagacccc |
118 |
Q |
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||||||| | |||||||| |||| ||||| ||||| |||||||| | ||||||||| || |||| ||| || || ||||| |||||||||||||| || | |
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| T |
54032047 |
agttttgggctgaagtcgctgtctaataagatgtttgcagattttaagtctcgatatatgacaggcggatctgctttacagtggagatactcaaggccac |
54032146 |
T |
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| Q |
119 |
gagctgctccaacagcaatcttcattcgagatctccagcttagaggttctttgtctcgggtaagatctgaaatgagaaatatgttatgatct |
210 |
Q |
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| T |
54032147 |
gagctgctccaacagcaatcttcattcgagaactccagcttagaggttctttgtcttggggaagatctgaaatgagaaataagttatgatct |
54032238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 56020672 - 56020863
Alignment:
| Q |
19 |
agttttgcgttgaagtcgttgtccaataaaatgttggcagatttcatgtctcgatagataacagacggttcagcattacaatggagatactcaagacccc |
118 |
Q |
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|||||||| ||||||| | |||| ||||||||| | |||||||| |||||||| |||||| | || ||| | | ||| ||||||||||||||||| |
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| T |
56020672 |
agttttgcactgaagtcatgttccagtaaaatgtttgaagatttcaagtctcgatggataaccggtggatcaacttgacagtggagatactcaagacctt |
56020771 |
T |
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| Q |
119 |
gagctgctccaacagcaatcttcattcgagatctccagcttagaggttctttgtctcgggtaagatctgaaatgagaaatatgttatgatct |
210 |
Q |
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|||||||||||| || |||||| || ||||| ||||| |||| || |||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
56020772 |
gagctgctccaagagaaatctttatccgagagctccaacttaatggagctttgtcttgggtaacatctgaaatgagaaataagttatgatct |
56020863 |
T |
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