View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_low_23 (Length: 239)

Name: NF4515_low_23
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_low_23
NF4515_low_23
[»] chr5 (10 HSPs)
chr5 (19-219)||(37429085-37429285)
chr5 (19-98)||(37640225-37640304)
chr5 (53-98)||(37400540-37400585)
chr5 (53-98)||(37533487-37533532)
chr5 (53-98)||(37594711-37594756)
chr5 (53-98)||(37697174-37697219)
chr5 (53-98)||(37703055-37703100)
chr5 (53-98)||(37824282-37824327)
chr5 (157-219)||(37412883-37412945)
chr5 (53-98)||(37712011-37712056)
[»] chr4 (2 HSPs)
chr4 (53-98)||(24217468-24217513)
chr4 (53-98)||(16842604-16842649)
[»] chr3 (1 HSPs)
chr3 (53-98)||(14553497-14553542)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 37429085 - 37429285
Alignment:
Q  19 cctgtgagttagttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaagttgttagattgtaaaagaa 118  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429085 cctgtgagttggttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaagttgttagattgtaaaagaa 37429184  T
Q  119 caaaatgtaacttggaaaatttggtgatttgaatcggaattgggccatctaatttattaaacgataaatctaacatagaaagctgagttagatgaaacaa 218  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37429185 caaaatttaacttggaaaatttggtgatttgaatcggaattgggccatctaatttattaaacgataaatctaacatagaaagctgagttagatgaaacaa 37429284  T
Q  219 t 219  Q
    |    
T  37429285 t 37429285  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 37640225 - 37640304
Alignment:
Q  19 cctgtgagttagttatcattgagatacaaccatgacaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    |||||||| | ||| ||| |||| ||||||  | ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37640225 cctgtgagattgttgtcactgaggtacaactctaacaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37640304  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 37400585 - 37400540
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37400585 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37400540  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37533487 - 37533532
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37533487 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37533532  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37594711 - 37594756
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37594711 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37594756  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37697174 - 37697219
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37697174 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37697219  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37703055 - 37703100
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37703055 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37703100  T

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Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37824282 - 37824327
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  37824282 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 37824327  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Complemental strand, 37412945 - 37412883
Alignment:
Q  157 attgggccatctaatttattaaacgataaatctaacatagaaagctgagttagatgaaacaat 219  Q
    ||||||||| ||||||||||||| |||||||||||   |||||| |||| |||||| ||||||    
T  37412945 attgggccaactaatttattaaatgataaatctaaataagaaagttgagctagatggaacaat 37412883  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 37712011 - 37712056
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    |||| |||||||| ||||||||||| |||||||||||||| |||||    
T  37712011 acaatgaaggcaaagaataacaccactgtggaattgttccatttaa 37712056  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 24217513 - 24217468
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||||||||||||||| || ||||||||||| |||||    
T  24217513 acaacgaaggcaaggaataacaccattgcggaattgttccatttaa 24217468  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 16842649 - 16842604
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| | |||||||||||| |||||    
T  16842649 acaacgaaggcaaagaataacaccaatttggaattgttccatttaa 16842604  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 14553497 - 14553542
Alignment:
Q  53 acaacgaaggcaaggaataacaccagtgtggaattgttccgtttaa 98  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  14553497 acaacgaaggcaaagaataacaccaatgtggaattgttccatttaa 14553542  T

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