View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_low_25 (Length: 237)

Name: NF4515_low_25
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_low_25
NF4515_low_25
[»] chr8 (1 HSPs)
chr8 (19-224)||(44135296-44135495)
[»] chr4 (3 HSPs)
chr4 (1-98)||(50057010-50057108)
chr4 (94-138)||(50055857-50055901)
chr4 (81-138)||(44834615-44834672)
[»] scaffold0366 (1 HSPs)
scaffold0366 (93-135)||(16327-16369)
[»] chr2 (1 HSPs)
chr2 (93-135)||(44402271-44402313)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 44135495 - 44135296
Alignment:
Q  19 caaagacatttatagaattcgaatttaagacctcttaaatttaagacatgtcttt-atcaatattatgtgtgacttatttttaaagtgtatgattcacat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||    
T  44135495 caaagacatttatagaattcgaatttaagacctcttaaatttaagacatgtcttttatcaatactatgtgtgactcatttttaaagtgtatgattcacat 44135396  T
Q  118 taattttattcaataaaagatcaagtgttnnnnnnngagtgttcgtatgatgaatcatatattgatgtttttattgcaaaacaaagcaaattacgaataa 217  Q
    || ||| ||||||||||||||||| ||||        ||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44135395 tagtttcattcaataaaagatcaaatgttaaaaaa--agtgttcgta-----aatcatatattgatgtttttattgcaaaacaaagcaaattacgaataa 44135303  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 50057108 - 50057010
Alignment:
Q  1 tttatatatacctcgctccaaagacatttatagaattcgaatttaagacctcttaaatttaagacatgtc-tttatcaatattatgtgtgacttatttt 98  Q
    |||||||||||||| ||||||||||||| ||| || | ||||||||||||||| ||||||||||| |||| |||||||||||||||  ||||| |||||    
T  50057108 tttatatatacctcactccaaagacattcatataacttgaatttaagacctctcaaatttaagacttgtcttttatcaatattatgcatgactcatttt 50057010  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 50055901 - 50055857
Alignment:
Q  94 atttttaaagtgtatgattcacattaattttattcaataaaagat 138  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  50055901 atttttaaagtgtatgattcacattagtttcattcaataaaagat 50055857  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 44834672 - 44834615
Alignment:
Q  81 ttatgtgtgacttatttttaaagtgtatgattcacattaattttattcaataaaagat 138  Q
    |||| ||||| |||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  44834672 ttatatgtgatttatttttaacgtggaagattcacattaatttaattcaataaaagat 44834615  T

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Target: scaffold0366 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 16327 - 16369
Alignment:
Q  93 tatttttaaagtgtatgattcacattaattttattcaataaaa 135  Q
    ||||||||||||||| ||||||||||||||| | |||||||||    
T  16327 tatttttaaagtgtaggattcacattaatttcactcaataaaa 16369  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Complemental strand, 44402313 - 44402271
Alignment:
Q  93 tatttttaaagtgtatgattcacattaattttattcaataaaa 135  Q
    ||||||||||||||| ||||||||||||||| | |||||||||    
T  44402313 tatttttaaagtgtaggattcacattaatttcactcaataaaa 44402271  T

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