View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_low_26 (Length: 232)

Name: NF4515_low_26
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_low_26
NF4515_low_26
[»] chr6 (4 HSPs)
chr6 (1-232)||(33596609-33596840)
chr6 (139-198)||(20148203-20148262)
chr6 (139-198)||(22184566-22184625)
chr6 (139-198)||(19305350-19305410)
[»] chr5 (2 HSPs)
chr5 (150-208)||(32418622-32418680)
chr5 (136-211)||(26994739-26994814)
[»] chr2 (3 HSPs)
chr2 (134-192)||(45714897-45714955)
chr2 (150-192)||(12168891-12168933)
chr2 (139-211)||(30638449-30638521)
[»] chr8 (2 HSPs)
chr8 (150-202)||(24507355-24507407)
chr8 (136-182)||(6928216-6928262)
[»] chr4 (2 HSPs)
chr4 (150-202)||(12683683-12683735)
chr4 (151-192)||(3981869-3981910)
[»] chr1 (1 HSPs)
chr1 (150-202)||(23280402-23280454)
[»] chr3 (3 HSPs)
chr3 (150-197)||(9801230-9801277)
chr3 (150-199)||(17143894-17143943)
chr3 (136-200)||(17485768-17485832)
[»] chr7 (1 HSPs)
chr7 (150-215)||(39879284-39879349)


Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 33596609 - 33596840
Alignment:
Q  1 atgtggatgaaagtgatgatgtccttccatgagattagtggtaagaatatcatatgaagtacatattgaacttcaagtttactcctatatgcaatgactg 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  33596609 atgtggatgaaagtgatgatgtccttccatgagattagtagtaagaatatcatatgaagtacatattgaacttcaagttttctctgatatgcaatgactg 33596708  T
Q  101 agtttgcctaaaatgttagggggtgcaagtatagattttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33596709 agtttgcctaaaatgttagggggtgcaagtatagattttgatttgtccagtgaggatggatgagtggcaaccgtggcggaaaatgctccagtgtgacggt 33596808  T
Q  201 gaaggcttctgatacagcggcgaagaatcctt 232  Q
    ||||||||||||||| ||||||||||||||||    
T  33596809 gaaggcttctgatacggcggcgaagaatcctt 33596840  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 20148203 - 20148262
Alignment:
Q  139 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacg 198  Q
    |||| |||| ||||||||||||||||||||||   ||||||||| |||||||||||||||    
T  20148203 tgatatgtccagtgaggatggatgagtggcaatgatggcggaaagtgctccggtgtgacg 20148262  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 198
Target Start/End: Complemental strand, 22184625 - 22184566
Alignment:
Q  139 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacg 198  Q
    |||| |||| ||||||||||||||||||||||   ||||||||| |||||||||||||||    
T  22184625 tgatatgtccagtgaggatggatgagtggcaatgatggcggaaagtgctccggtgtgacg 22184566  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 198
Target Start/End: Original strand, 19305350 - 19305410
Alignment:
Q  139 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaa-tgctccggtgtgacg 198  Q
    |||| |||||||||||||||||||||| ||||  |||||| |||| |||||||||||||||    
T  19305350 tgatatgtctagtgaggatggatgagtagcaatggtggcgtaaaattgctccggtgtgacg 19305410  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 32418680 - 32418622
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggctt 208  Q
    |||||||||||||| ||||||| ||||||||||||||| |||||||| ||| |||||||    
T  32418680 gtgaggatggatgaatggcaacggtggcggaaaatgctacggtgtgatggtaaaggctt 32418622  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 26994814 - 26994739
Alignment:
Q  136 ttttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctg 211  Q
    ||||||||||||  ||||||||||||||| || ||| |||| ||||| ||||||| ||||||||||| || |||||    
T  26994814 ttttgatttgtccggtgaggatggatgagaggtaacagtggtggaaagtgctccgatgtgacggtgatggtttctg 26994739  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 45714897 - 45714955
Alignment:
Q  134 gattttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggt 192  Q
    |||| ||||||||| | |||||||||||||||||||||  ||||||||| |||||||||    
T  45714897 gattatgatttgtccaatgaggatggatgagtggcaacaatggcggaaagtgctccggt 45714955  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 12168891 - 12168933
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggt 192  Q
    |||| |||||||||| |||||| ||||||||||||||||||||    
T  12168891 gtgaagatggatgagaggcaacagtggcggaaaatgctccggt 12168933  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 30638449 - 30638521
Alignment:
Q  139 tgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctg 211  Q
    |||| |||| |||||| | |||||||||||||| || ||||| ||||| | ||||||||||| | ||||||||    
T  30638449 tgatatgtccagtgagaacggatgagtggcaacggttgcggataatgcactggtgtgacggtaatggcttctg 30638521  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 24507355 - 24507407
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtga 202  Q
    ||||||||||||||| |||||| ||| |||| |||||||| ||||||||||||    
T  24507355 gtgaggatggatgagaggcaacggtgacggataatgctccagtgtgacggtga 24507407  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 6928262 - 6928216
Alignment:
Q  136 ttttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaa 182  Q
    ||||||| ||||| ||||||||||||||| |||||| ||||||||||    
T  6928262 ttttgatctgtctggtgaggatggatgagaggcaacagtggcggaaa 6928216  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 12683683 - 12683735
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtga 202  Q
    |||||||||||||||||||||  |||||||| |||| ||| ||||||||||||    
T  12683683 gtgaggatggatgagtggcaaaggtggcggataatgttccagtgtgacggtga 12683735  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 3981869 - 3981910
Alignment:
Q  151 tgaggatggatgagtggcaaccgtggcggaaaatgctccggt 192  Q
    |||||||||||||| |||||| ||||||||||||| ||||||    
T  3981869 tgaggatggatgagaggcaacggtggcggaaaatgttccggt 3981910  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 23280454 - 23280402
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtga 202  Q
    ||||||||| |||||||||||| |||||||||| ||||| |||| ||||||||    
T  23280454 gtgaggatgaatgagtggcaacggtggcggaaagtgctctggtgagacggtga 23280402  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 9801277 - 9801230
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgac 197  Q
    |||||||||||||||  ||||| |||||||||||||||||| ||||||    
T  9801277 gtgaggatggatgagaagcaacagtggcggaaaatgctccgatgtgac 9801230  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 17143943 - 17143894
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacgg 199  Q
    ||||| ||||||||||| |||| |||||||| ||| ||||||||||||||    
T  17143943 gtgagaatggatgagtgtcaacggtggcggataattctccggtgtgacgg 17143894  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 200
Target Start/End: Complemental strand, 17485832 - 17485768
Alignment:
Q  136 ttttgatttgtctagtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggt 200  Q
    ||||||| ||||  ||||| | |||||||||||||| | |||||| |||||||| ||||||||||    
T  17485832 ttttgatctgtccggtgagaacggatgagtggcaacggcggcggataatgctccagtgtgacggt 17485768  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 39879284 - 39879349
Alignment:
Q  150 gtgaggatggatgagtggcaaccgtggcggaaaatgctccggtgtgacggtgaaggcttctgatac 215  Q
    ||||| ||||||||| | |||| |||| ||||| ||||||||||||||||||| || ||| |||||    
T  39879284 gtgagaatggatgagagacaacggtggtggaaagtgctccggtgtgacggtgatggtttccgatac 39879349  T

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