View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_low_3 (Length: 455)
Name: NF4515_low_3
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 41093955 - 41094381
Alignment:
| Q |
21 |
gcatatgacacgttgcaattgaagttacttatggttgttgtgatttgtgaaaggcaaaacaaaggaacggaaagaattgtgatccgaagctaaggtaatt |
120 |
Q |
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| T |
41093955 |
gcatatgacacgttgcaattgaagttagttatggttgttgtgatttgtgaaaggcaaaacaaaggaacagaaagaattgtgatccgaagctaaggtaatt |
41094054 |
T |
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| Q |
121 |
caactatggagtctctagactcgtttgaggaagagcagtcacatcatcaatctccaaccactggtggaggaggaggagtagtagtaggaggaccttttga |
220 |
Q |
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| T |
41094055 |
caactatggagtctctagactcgtttgaggaagagcagtcacatcatcaatctccaaccactggtggaggaggaggagtagtagtaggaggaccttttga |
41094154 |
T |
|
| Q |
221 |
agatgacaataatagtaactatgaaggattcaattctcaacagcagtttgattatggatccacattccatcctccaaataatcccgacgacgatcacctc |
320 |
Q |
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| T |
41094155 |
agatgacaacaatagtaactatgaaggattcaattctcaacagcagtttgattatggatccacattccatcctccaaataatcccgacgacgatcacctc |
41094254 |
T |
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| Q |
321 |
accgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggattcggagtttcaagccctaaccctaaccctgatttcgttactc |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41094255 |
accgttgacaccagcaacaacatcaacaatgaccaacattctcctcccggatatggattcggagtttcaagccctaaccctaaccctgatttcgttactc |
41094354 |
T |
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| Q |
421 |
cgtttcaaaccaatgaaactgatgatg |
447 |
Q |
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| T |
41094355 |
cgtttcaaaccaatgaaactgatgatg |
41094381 |
T |
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