View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4515_low_7 (Length: 360)
Name: NF4515_low_7
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4515_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 37317509 - 37317850
Alignment:
| Q |
1 |
cattaggaaaatacacggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatg |
100 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317509 |
cattaggaaaatacatggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatg |
37317608 |
T |
|
| Q |
101 |
gaagaaacattcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317609 |
gaagaaacattcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggg |
37317708 |
T |
|
| Q |
201 |
gaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317709 |
gaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattg |
37317808 |
T |
|
| Q |
301 |
atcaagtggttctagagttgagagattcgtacaagccacttg |
342 |
Q |
| |
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| T |
37317809 |
atcaagtggttctagagttgagagattcgtacaagccacttg |
37317850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 37964625 - 37964893
Alignment:
| Q |
17 |
ggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacattcaatt |
116 |
Q |
| |
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|||||| |||||||||||| ||||| |||||||| || || |||| |||||||||||||| | ||||||||| ||||| |||| |||| | ||||||| |
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| T |
37964625 |
ggaattagaaatgaattggatggataaaatcaat---gagatcaagaacaatggtccttcaatagctgatgagaaggaacaatgggagaagccttcaatt |
37964721 |
T |
|
| Q |
117 |
tacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatgg |
216 |
Q |
| |
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|||||| |||| ||| ||| || | | |||||||| |||||||||||||||| |||||| ||||||||||| ||| |||||||||| |||| | | |
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| T |
37964722 |
tacaaagtaccatcacaagtcacggatttgaacaaaaaggcctacaaaccacaagtaatttcctttggtccttaccataatggggaggagaatttaaagc |
37964821 |
T |
|
| Q |
217 |
ctatggaagaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttat |
288 |
Q |
| |
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||||||||| ||||| || |||| ||| ||| |||||||| ||||||||||||| | ||||||||||||| |
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| T |
37964822 |
ttatggaagagcacaaatatcgagcgcttgttcgtttcttaaagaggtgtgaaaagtccattgagttgttat |
37964893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 37242369 - 37242651
Alignment:
| Q |
11 |
atacacggaatttgaaatgaattgggtggatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacat |
110 |
Q |
| |
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||||| ||| || |||||||| ||| | |||||||||||| | || || |||| |||||||||| ||| | || |||||| ||||| |||| |||| | | |
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| T |
37242369 |
atacatggagttagaaatgaagtggcttgatcaaatcaatgaggagatcaagaacaatggtcctacaatagcttatgagaaggaacaatgggagaagcct |
37242468 |
T |
|
| Q |
111 |
tcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatt |
210 |
Q |
| |
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|||||||||||| |||| ||| ||| || | | |||||||| |||| ||||| ||||||||||| ||||||||||| ||||||||||||||| ||| |
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| T |
37242469 |
tcaatttacaaagtaccctcacaagtcacggagttgaacaaaaatgcctttaaaccccaagcaatttcctttggtccttaccattatggggaggaaaatt |
37242568 |
T |
|
| Q |
211 |
tgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaa |
293 |
Q |
| |
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| | | ||||||| | ||||||||| |||| || |||||||| |||| |||||||| |||||| ||||||||||||||||| |
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| T |
37242569 |
taaagcttatggaaaagcacaagcatcgagccctccttcattttttaaagaggtgtggaaagcccgttgagttgttattccaa |
37242651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 93 - 331
Target Start/End: Original strand, 37273154 - 37273392
Alignment:
| Q |
93 |
gaactatggaagaaacattcaatttacaaaataccttcaagagtaactgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatc |
192 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||| ||| | | || | | ||| ||||||||||| || | ||||||||||||||| ||||| | |
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| T |
37273154 |
gaacaatggaagaaacattcaatttacaaagtaccctcacaactcacggagttgaacgaaaaagcctacgtgccccgagcaatttcatttggaccttacc |
37273253 |
T |
|
| Q |
193 |
attatggggaggaacatttgatggctatggaagaacacaagcatagagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattcca |
292 |
Q |
| |
|
|||||||| |||| ||||| | | |||||||||| ||||||||| ||||||||||||||||| ||| |||||||| | || | || | | | ||||||| |
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| T |
37273254 |
attatgggaaggagcatttaaagcctatggaagagcacaagcatcgagctcttcttcatttcctaaagaggtgtggagagtcctttaaatcgatattcca |
37273353 |
T |
|
| Q |
293 |
aaaaattgatcaagtggttctagagttgagagattcgta |
331 |
Q |
| |
|
|||| | ||| |||||| || |||||||||||| ||||| |
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| T |
37273354 |
aaaattggataaagtggctcaagagttgagagactcgta |
37273392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 342
Target Start/End: Original strand, 37304477 - 37304782
Alignment:
| Q |
39 |
gatcaaatcaataacgaaataaagagcaatggtccttcaacatctgatgagatggaactatggaagaaacattcaatttacaaaataccttcaagagtaa |
138 |
Q |
| |
|
|||||||||||| | || || |||| |||||||||| ||| | ||||||||| ||||| |||| |||| | ||||||||||||| |||| ||| | | | |
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| T |
37304477 |
gatcaaatcaatgaagagatcaagaacaatggtcctacaatagctgatgagaaggaacaatgggagaagccttcaatttacaaagtaccctcacaactca |
37304576 |
T |
|
| Q |
139 |
ctgcactaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacattt--gatggctatggaagaacacaagcat |
236 |
Q |
| |
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| | || || || || ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| | ||||||||| ||||||||| |
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| T |
37304577 |
cggagctgaaaaagaaggcctacaaaccacaagcaatttcatttggtccttaacattatggagaggagaatttacagtttatatggaagagcacaagcat |
37304676 |
T |
|
| Q |
237 |
agagctcttcttcatttcttaaggaggtgtgaaaagcctattgagttgttattccaaaaaattgatcaagtggttctagagttgagagattcgtacaagc |
336 |
Q |
| |
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||||| ||| ||| |||||||| ||| || |||| || |||||||| ||||| ||| || |||||||||| |||||| ||||| ||||| || | |
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| T |
37304677 |
agagcccttgttcgtttcttaaagagatgccaaaaacccattgagttcttatttcaatgtatggatcaagtggccaaagagttaagagactcgtataaac |
37304776 |
T |
|
| Q |
337 |
cacttg |
342 |
Q |
| |
|
|||||| |
|
|
| T |
37304777 |
cacttg |
37304782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 144 - 254
Target Start/End: Complemental strand, 16573425 - 16573315
Alignment:
| Q |
144 |
ctaaacaaaaaagcctacaaaccacaagcaatttcatttggtccttatcattatggggaggaacatttgatggctatggaagaacacaagcatagagctc |
243 |
Q |
| |
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||||||||||| | ||||||||||||| |||||| ||||||||||||||| |||| ||||| ||||||||||| |||||||| ||||||||||||| | |
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| T |
16573425 |
ctaaacaaaaatgtctacaaaccacaaaaaatttcgtttggtccttatcatcatggtgaggagcatttgatggcaatggaagagtacaagcatagagccc |
16573326 |
T |
|
| Q |
244 |
ttcttcatttc |
254 |
Q |
| |
|
|| |||||||| |
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|
| T |
16573325 |
ttattcatttc |
16573315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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