View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4515_low_9 (Length: 339)

Name: NF4515_low_9
Description: NF4515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4515_low_9
NF4515_low_9
[»] chr1 (1 HSPs)
chr1 (17-321)||(8086981-8087279)


Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 321
Target Start/End: Complemental strand, 8087279 - 8086981
Alignment:
Q  17 cacagacacttccatctcatcattatttttatttttctctgccttaccagctgaacaaaccgatcccatttttgtnnnnnnnnttcaaaacctgcacaaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||    
T  8087279 cacagacacttccatctcatcattatttttatttttctctgccttaccagctgaacaaaccgatcccatttt-gtaaaaaaa-ttcaaaacctgcacaaa 8087182  T
Q  117 ttcgtataatatatattatagagtaactttataacaattttaagtctaagaagaaaaa-taaagaccaactgaatttggttgaaatgaaagaaataacac 215  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8087181 ttcgtataatatatactatagagtaactttataacaattttaagtctaagaagaaaaaataaagaccaactgaatttggttgaaatgaaagaaataacac 8087082  T
Q  216 gttgatgacatgcatatcttatcttatgatatgatatgaattgaattgagaccaaaaatgttgaaggagttaggagcatgtatgtatgtgtgtacctgct 315  Q
    ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  8087081 gttgatgacatgcatatcttatcttatgatatgatatgaa-----ttgagaccaaaaatgttgaaggagtttggagcatgtatgtatgtttgtacctgct 8086987  T

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