View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4516-Insertion-1 (Length: 726)
Name: NF4516-Insertion-1
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 7 - 467
Target Start/End: Original strand, 28595145 - 28595606
Alignment:
| Q |
7 |
actaagttcaatatgtgatgcacaattgtcttctacgttttacaatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtc |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28595145 |
actaagttcaatatgtgatgcacaattgtcttctacgttttacgatggtacatgccctaatgcattaagcactatcagaactgccattcgtactgctgtc |
28595244 |
T |
|
| Q |
107 |
tctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgatt |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595245 |
tctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgatt |
28595344 |
T |
|
| Q |
207 |
aatcatataaagtattcattatgatcatattaattag-ttaattgatcttaattaatttacagggttgtgatgcatcaattttgctagacgacacctcca |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595345 |
aatcatataaagtattcattatgatcatattaattagtttaattgatcttaattaatttacagggttgtgatgcatcaattttgctagacgacacctcca |
28595444 |
T |
|
| Q |
306 |
caattgagagtgaaaagagtgcacttccaaatcttaactctgtaagaggtttccaagttattgataaagcaaaagctgatgtagagaaagtatgtcctgg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28595445 |
caattgagagtgaaaagagtgcacttccaaatcttaattctgtaagaggtttccaagttattgataaagcaaaagctgatgtagagaaagtatgtcctgg |
28595544 |
T |
|
| Q |
406 |
agttgtgtcttgtgctgacattgtagcaatagcagcacgtgatgcatcatttgttgtaagtt |
467 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
28595545 |
agttgtgtcttgtgctgacattgtagcaatagcggcacgtgatgcatcatttgctgtaagtt |
28595606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 32493368 - 32493818
Alignment:
| Q |
8 |
ctaagttcaatatgtgatgcacaattgtcttctacgttttacaatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtct |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||| |||||||| ||||||| |
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|
| T |
32493368 |
ctaagctcaatatgtgatgcacaattgtcttctacgttttacgatagtacatgccctaatgcactaagcactatcagaactgtgattcgtaccgctgtct |
32493467 |
T |
|
| Q |
108 |
ctaaggagcgtcgtatggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagtatattaattctatacatgtattttgatta |
207 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
32493468 |
ctaaagagcgtcgtatggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagttcatga----------------ttgatta |
32493551 |
T |
|
| Q |
208 |
atcatataaagtattcattatgatcatatta-attagttaattgat-----cttaa-ttaatttacagggttgtgatgcatcaattttgctagacgacac |
300 |
Q |
| |
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| ||||||||||||||||||||||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32493552 |
accatataaagtattcattatgatcatattatattagtttattgataagatcttaaattaatttacagggttgtgatgcatcaattttgctagacgacac |
32493651 |
T |
|
| Q |
301 |
ctccacaattgagagtgaaaagagtgcacttccaaatcttaactctgtaagaggtttccaagttattgataaagcaaaagctgatgtagagaaagtatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||| ||||||||||| |
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| T |
32493652 |
ctccacaattgagagtgaaaagagtgcacttccaaatattaactctgtaagaggatttgaagttattgataaagcaaaagctaatgtggagaaagtatgc |
32493751 |
T |
|
| Q |
401 |
cctggagttgtgtcttgtgctgacattgtagcaatagcagcacgtgatgcatcatttgttgtaagtt |
467 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |||||||| |
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|
| T |
32493752 |
cctggagttgtgtcttgtgctgacatcgtagcagtagcagctcgtgatgcatcatttgctgtaagtt |
32493818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 535 - 726
Target Start/End: Original strand, 28595675 - 28595867
Alignment:
| Q |
535 |
atgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctatcattgctagtaaaa-gtttggccaattcagaccttccaaaatttaca |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
28595675 |
atgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctaccattgctagtaaaaagtttggccaattcagaccttccaaaatttaca |
28595774 |
T |
|
| Q |
634 |
gatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaaccca |
726 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28595775 |
gatgatctaacaactctaatatcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactaaccca |
28595867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 534 - 726
Target Start/End: Original strand, 32493895 - 32494087
Alignment:
| Q |
534 |
gatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctatcattgctagtaaaagtttggccaattcagaccttccaaaatttaca |
633 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |||||||||||||| | | ||||||| |||||| ||||||||||||||||||||||||||| |
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|
| T |
32493895 |
gatgcaggtgggtggtccgtcatggacggtaaaactcggaagaagagactccaccgttgctagcaaaagtcaggccaattcagaccttccaaaatttacg |
32493994 |
T |
|
| Q |
634 |
gatgatctaacaactcttatatcccattttaccaataaaggtcttactctcaaagatatggtgactttatctggtaagttcatcactaaccca |
726 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
32493995 |
gatgatctaacaactcttatagcccattttaccaataaaggtcttactctcaaagatatggttactttatctggtaagttcatcactgaccca |
32494087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 28587653 - 28587496
Alignment:
| Q |
19 |
atgtgatgcacaattgtcttctacgttttacaatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaaggagcgt |
118 |
Q |
| |
|
||||||||| ||||| |||||||| ||||| | |||| |||||||||||| ||||||| ||||||||| | ||||||||||| |||||||||||||| |
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|
| T |
28587653 |
atgtgatgcccaattatcttctacattttatgacagtacttgccctaatgcactaagcaccatcagaacttcgattcgtactgcaatctctaaggagcgt |
28587554 |
T |
|
| Q |
119 |
cgtatggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaatta |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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|
| T |
28587553 |
cgtatggctgcatctctcattcgtcttcactttcatgattgttttgtgcaggtaatta |
28587496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 28592831 - 28592663
Alignment:
| Q |
15 |
caatatgtgatgcacaattgtcttctacgttttacaatggtacatgccctaatgcattaagcactatcagaactgcaattcgtactgctgtctctaagga |
114 |
Q |
| |
|
||||||||||||| || | |||||||| || ||| | |||||||||||||||| ||||||||||| |||||| | ||||||||||||||||||||||| |
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|
| T |
28592831 |
caatatgtgatgcgcagctttcttctactttctacgacagtacatgccctaatgccttaagcactattagaacttcgattcgtactgctgtctctaagga |
28592732 |
T |
|
| Q |
115 |
gcgtcgtatggctgcatctctcattcgtcttcattttcatgattgttttgtccaggtaattagtatatt |
183 |
Q |
| |
|
| |||| ||||| |||||| ||||||| |||||||||||||| ||||||||||| ||||||| |||||| |
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|
| T |
28592731 |
gtgtcgcatggcggcatctgtcattcgccttcattttcatgactgttttgtccaagtaattactatatt |
28592663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 256 - 456
Target Start/End: Complemental strand, 28587411 - 28587211
Alignment:
| Q |
256 |
aattaatttacagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcacttccaaatcttaactctgtaagaggt |
355 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| | || || | |||||||| ||||| ||||||||||||| ||||||| ||||||| |||||||| |
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|
| T |
28587411 |
aattaatttgcagggttgtgatgcatcaattttgttggatgatagttccacaatcgagagcgaaaagagtgcacgtccaaatgttaactcagtaagagga |
28587312 |
T |
|
| Q |
356 |
ttccaagttattgataaagcaaaagctgatgtagagaaagtatgtcctggagttgtgtcttgtgctgacattgtagcaatagcagcacgtgatgcatcat |
455 |
Q |
| |
|
|| || | ||||||||||||||| |||| || |||||||| ||||| |||||||||||||| || ||||| | || | ||||||||||||||||||| |
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|
| T |
28587311 |
tttgaaatcattgataaagcaaaatctgaggttgagaaagtttgtcccggagttgtgtcttgcgcggacatacttgctgtggcagcacgtgatgcatcat |
28587212 |
T |
|
| Q |
456 |
t |
456 |
Q |
| |
|
| |
|
|
| T |
28587211 |
t |
28587211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 266 - 467
Target Start/End: Complemental strand, 28592587 - 28592386
Alignment:
| Q |
266 |
cagggttgtgatgcatcaattttgctagacgacacctccacaattgagagtgaaaagagtgcacttccaaatcttaactctgtaagaggtttccaagtta |
365 |
Q |
| |
|
||||| |||||||||||||||||| | || |||| | ||||| ||||| ||||||| ||||||||| ||| ||||||| |||||||| || || | | |
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|
| T |
28592587 |
cagggatgtgatgcatcaattttgttggatgacagtcctacaatcgagagcgaaaagaatgcacttcctaatattaactcagtaagaggatttgaaatca |
28592488 |
T |
|
| Q |
366 |
ttgataaagcaaaagctgatgtagagaaagtatgtcctggagttgtgtcttgtgctgacattgtagcaatagcagcacgtgatgcatcatttgttgtaag |
465 |
Q |
| |
|
|||||||||||||| |||| || |||||| | ||||| |||||||||||||| || ||||| |||| | |||||||||||||||||||||| |||||| |
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|
| T |
28592487 |
ttgataaagcaaaatctgaggttgagaaaatttgtcccggagttgtgtcttgcgcggacatactagctgtggcagcacgtgatgcatcatttgctgtaag |
28592388 |
T |
|
| Q |
466 |
tt |
467 |
Q |
| |
|
|| |
|
|
| T |
28592387 |
tt |
28592386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 534 - 664
Target Start/End: Complemental strand, 28592311 - 28592181
Alignment:
| Q |
534 |
gatgcaggtgggtggtccatcatggacggtaaaacttggaagaagagactctatcattgctagtaaaagtttggccaattcagaccttccaaaatttaca |
633 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||| || || || ||||||||||||||| | |||||||| |||||| |
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| T |
28592311 |
gatgcaggtgggtggtccatcatggacggtaaaacttggacggagagactctaccacagcaagcaaaagtttggccaatactgaccttccgttatttacg |
28592212 |
T |
|
| Q |
634 |
gatgatctaacaactcttatatcccatttta |
664 |
Q |
| |
|
|| ||||| |||||||||||||| ||||||| |
|
|
| T |
28592211 |
gacgatcttacaactcttatatctcatttta |
28592181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 544 - 664
Target Start/End: Complemental strand, 28587203 - 28587083
Alignment:
| Q |
544 |
ggtggtccatcatggacggtaaaacttggaagaagagactctatcattgctagtaaaagtttggccaattcagaccttccaaaatttacagatgatctaa |
643 |
Q |
| |
|
||||| || |||||||| ||||||||||||||||||||||||| | || || ||||||||||||||| | |||||||| ||||||||| ||||| | |
|
|
| T |
28587203 |
ggtggcccgtcatggacagtaaaacttggaagaagagactctacaacagcaagcaaaagtttggccaataccgaccttccgttatttacagacgatctta |
28587104 |
T |
|
| Q |
644 |
caactcttatatcccatttta |
664 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
28587103 |
caactcttatatctcatttta |
28587083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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