View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4516-Insertion-3 (Length: 563)

Name: NF4516-Insertion-3
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4516-Insertion-3
NF4516-Insertion-3
[»] chr5 (6 HSPs)
chr5 (58-433)||(38403018-38403392)
chr5 (458-563)||(38402912-38403018)
chr5 (6-63)||(38403410-38403467)
chr5 (389-490)||(38403450-38403551)
chr5 (91-193)||(38393332-38393433)
chr5 (389-490)||(38393517-38393618)
[»] chr7 (4 HSPs)
chr7 (382-493)||(18096755-18096866)
chr7 (407-468)||(4801946-4802007)
chr7 (112-208)||(18097185-18097281)
chr7 (401-448)||(18097405-18097452)
[»] scaffold0101 (2 HSPs)
scaffold0101 (369-508)||(43515-43652)
scaffold0101 (70-134)||(43708-43771)
[»] scaffold0045 (1 HSPs)
scaffold0045 (404-488)||(77732-77816)
[»] chr8 (1 HSPs)
chr8 (70-134)||(22739536-22739599)
[»] chr4 (1 HSPs)
chr4 (413-477)||(48350230-48350294)


Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 58 - 433
Target Start/End: Complemental strand, 38403392 - 38403018
Alignment:
Q  58 cttctttctccactttaacatgtcttctgcccctcaaattattcatctcaattaaaaagttaaatcaatctcttcatttttaccaacatgattaaaaatg 157  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  38403392 cttctttctccgctttaacatgtcttctgcccctcaaattattcatctcaattaaaaagttaaatcaatctctttatttttaccaacatgattaaaaatg 38403293  T
Q  158 aaattcaattaagaatccaagttttcatctctggtattctcaagagcaacatctttatttagagaagataatactgaagaactctacaaaacaaatttaa 257  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  38403292 aaattcaattaagaatccaagttttcatctctcgtattctcaagagcaacatctttatttagagaagataataccgaataactctacaaaacaaatttaa 38403193  T
Q  258 agttggagtatggataaatacataaataaggttaagagtgaattttgatactttatttgtaattattaataaagggtgaaagagatgttacaggaaaaga 357  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  38403192 agttggagtatggataaatacataaataaggttaagaatgaattttgatactttatttgtaattattaataaaggatgaaagagatgctaaaggaaaaga 38403093  T
Q  358 agcgtataaggcattggtgcataagggatgtagtgagaattggcacatgactccattaagtcatgttttaatatca 433  Q
    ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38403092 agcgt-taaggcattggtgcataagagatgtagtgagaattggcacatgactccattaagtcatgttttaatatca 38403018  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 458 - 563
Target Start/End: Complemental strand, 38403018 - 38402912
Alignment:
Q  458 accatttatttatattgttctcacataaagatatcaatcccacttgatatgcccccgtatt--acacacacataattcaaaagacaattttcgaatggca 555  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||||||||||| |||||||    
T  38403018 accatttatttatattgttctcacataaagatatcaatcccacttgatatg-ccccgtattacacacacacacaattcaaaagacaattttcaaatggca 38402920  T
Q  556 tgctcatg 563  Q
    ||||||||    
T  38402919 tgctcatg 38402912  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 38403467 - 38403410
Alignment:
Q  6 catgtatcaattatcatttctatcaacaagcgcgctaacactccaattcctccttctt 63  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  38403467 catgtatcaattatcacttctatcaacaagcgcgctaacactccagttccttcttctt 38403410  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 389 - 490
Target Start/End: Original strand, 38403450 - 38403551
Alignment:
Q  389 agtgagaattggcacatgactccattaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttatttatattgttctcacataaaga 488  Q
    ||||| |||||  |||||||||  |||| |||||||||||| ||  | ||| ||||||||| |||||||||||||||||  |||||||||| ||||||||    
T  38403450 agtgataattgatacatgactcacttaaatcatgttttaatctcgctgattccttttaatatgagggctaccatttattcctattgttctctcataaaga 38403549  T
Q  489 ta 490  Q
    ||    
T  38403550 ta 38403551  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 38393433 - 38393332
Alignment:
Q  91 tcaaattattcatctcaattaaaaagttaaatcaatctcttcatttttaccaacatgattaaaaatgaaattcaattaagaatccaagttttcatctctg 190  Q
    ||||| |||||||||| ||||||| | ||||||| ||||||||||||   ||| || |||||||| ||||||| | |||||||||||| |||||||| ||    
T  38393433 tcaaactattcatctccattaaaa-gctaaatcagtctcttcattttcttcaatattattaaaaacgaaattctagtaagaatccaagctttcatctttg 38393335  T
Q  191 gta 193  Q
    |||    
T  38393334 gta 38393332  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 389 - 490
Target Start/End: Original strand, 38393517 - 38393618
Alignment:
Q  389 agtgagaattggcacatgactccattaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttatttatattgttctcacataaaga 488  Q
    |||||||||||  |||||||||  ||||||||||||||||| |||| | |||||||||||| ||| ||||| || | ||  |||| ||||| ||||||||    
T  38393517 agtgagaattgatacatgactcacttaagtcatgttttaatctcaaccctttcttttaatatgagagctacaatattttcttattattctcgcataaaga 38393616  T
Q  489 ta 490  Q
    ||    
T  38393617 ta 38393618  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 382 - 493
Target Start/End: Complemental strand, 18096866 - 18096755
Alignment:
Q  382 gggatgtagtgagaattggcacatgactccattaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttatttatattgttctcac 481  Q
    |||||| |||||||||| || ||||||||  |||||||| |||||||| || | |||| |||||||||  |||| |||||||||||| |||| |||||||    
T  18096866 gggatggagtgagaatttgcgcatgactcacttaagtcaggttttaatctccaccattccttttaatataagggttaccatttatttctattattctcac 18096767  T
Q  482 ataaagatatca 493  Q
    || |||||||||    
T  18096766 attaagatatca 18096755  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 4802007 - 4801946
Alignment:
Q  407 actccattaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttattt 468  Q
    ||||| ||||||||||||||||| |||| |||||||||||||| ||||| ||||||||||||    
T  4802007 actcccttaagtcatgttttaatctcaaccatttcttttaatatgagggataccatttattt 4801946  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 208
Target Start/End: Complemental strand, 18097281 - 18097185
Alignment:
Q  112 aaaagttaaatcaatctcttcatttttaccaacatgattaaaaatgaaattcaattaagaatccaagttttcatctctggtattctcaagagcaaca 208  Q
    ||||| ||||||||||||||||| ||  |||| |||||||||||  ||||| || |||||||| ||| ||| |  | ||||| ||||||||||||||    
T  18097281 aaaagataaatcaatctcttcatcttctccaatatgattaaaaacaaaatttaagtaagaatctaagattttaattttggtactctcaagagcaaca 18097185  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Original strand, 18097405 - 18097452
Alignment:
Q  401 cacatgactccattaagtcatgttttaatatcaatcatttcttttaat 448  Q
    ||||||||||  ||||||||||||||||| ||||||||| ||||||||    
T  18097405 cacatgactcacttaagtcatgttttaatctcaatcattccttttaat 18097452  T

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Target: scaffold0101 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 369 - 508
Target Start/End: Complemental strand, 43652 - 43515
Alignment:
Q  369 cattggtgcataagggatgtagtgagaattggcacatgactccattaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttattt 468  Q
    ||||| ||||||| ||||| |||||| | |  ||||||||||  | |||||||||||||||||||  ||||  ||||||||| |||||||| |||||||     
T  43652 cattgttgcataaaggatgaagtgaggactaacacatgactcactcaagtcatgttttaatatca--cattaattttaatacaagggctacaatttattc 43555  T
Q  469 atattgttctcacataaagatatcaatcccacttgatatg 508  Q
    ||||  |||||| ||||||||| || || ||| |||||||    
T  43554 atatcattctcatataaagataacattctcacatgatatg 43515  T

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Target: scaffold0101; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 43708 - 43771
Alignment:
Q  70 ctttaacatgtcttctgcccctcaaattattcatctcaattaaaaagttaaatcaatctcttcat 134  Q
    ||||||||| |||||| |||| | ||||||||||||||| | ||||| |||||||||||||||||    
T  43708 ctttaacatttcttcttccccaccaattattcatctcaagt-aaaagataaatcaatctcttcat 43771  T

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Target: scaffold0045 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 404 - 488
Target Start/End: Original strand, 77732 - 77816
Alignment:
Q  404 atgactccattaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttatttatattgttctcacataaaga 488  Q
    |||||||  |||||| |||| |||| ||||||||||  |||||||   ||||||||||||||||  ||||||||||| |||||||    
T  77732 atgactcatttaagtgatgtattaacatcaatcattcattttaatctaagggctaccatttattattattgttctcaaataaaga 77816  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 70 - 134
Target Start/End: Original strand, 22739536 - 22739599
Alignment:
Q  70 ctttaacatgtcttctgcccctcaaattattcatctcaattaaaaagttaaatcaatctcttcat 134  Q
    ||||||||| | |||| ||| || ||||||||||||||||| ||||| |||||||||||||||||    
T  22739536 ctttaacatttgttcttcccgtccaattattcatctcaatt-aaaagataaatcaatctcttcat 22739599  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 413 - 477
Target Start/End: Original strand, 48350230 - 48350294
Alignment:
Q  413 ttaagtcatgttttaatatcaatcatttcttttaatacgagggctaccatttatttatattgttc 477  Q
    |||||||||||||||||  ||||| || ||||||||| |||  |||||||||||| |||| ||||    
T  48350230 ttaagtcatgttttaatcgcaatcgttccttttaatatgagaactaccatttattcatatcgttc 48350294  T

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