View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516-Insertion-4 (Length: 550)
Name: NF4516-Insertion-4
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516-Insertion-4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 485; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 11163942 - 11164484
Alignment:
| Q |
8 |
tcctccccgattcaccaggttacaaacttcttcttctcttcttatatctattagggttttttcatatgctttattagggttcttaatattctttatatca |
107 |
Q |
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| T |
11163942 |
tcctcctcgattcaccaggttacaaacttcttcttctcttcttatatctattagggttttttcatatgctttattagggttcttaatattctttacatca |
11164041 |
T |
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| Q |
108 |
ctgaattattttcatcttttcagcttcttattccctttttgcttcaaattaggttaatgggtatctatattctatctcatttctcactattttcgattan |
207 |
Q |
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| T |
11164042 |
ctgaattattttcatcttttcagcttcttattccctttttccttcaaattaggttaatgggtatctatattctatctcatttctcactattttcgattat |
11164141 |
T |
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| Q |
208 |
nnnnnngctttgctttgcttcacctagttcgaagatgaagaagatggtttcaaaaatggggattcctttggagcttttgatgaaaggtaaacataaatct |
307 |
Q |
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| T |
11164142 |
ttttttgctttgctttgcttcacctagttcgaagatgaagaagatggtttcaaaaatggggattcctttggagcttttgatgaaaggtaaacataaatct |
11164241 |
T |
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| Q |
308 |
aaatcctttccaaaacccattagggtttttatctannnnnnnctctttcaattgtatgaaattttcaaaaggaaaagctgagtttgaatgaatatttatt |
407 |
Q |
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| T |
11164242 |
aaatcctttccaaaacccattagggtttttatctatttttttctctttcaattgtatgaaattttcaaaaggaaaagctgagtttgaatgaatatttatt |
11164341 |
T |
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| Q |
408 |
tggttgataatgatggaaacaatagcgtggcttcgatgatggaaactgaagttgttgatgttgataacaaacctgggattgaaacttttgatatgatggt |
507 |
Q |
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| T |
11164342 |
tggttgataatgatggaaacaatagtgtggcttcgatgatggaaactgaagttgttgatgttgataacaaacctgggattgaaacttttgatatgatggt |
11164441 |
T |
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| Q |
508 |
gtttgacgataataaggtggttaataataatggtggcagcagc |
550 |
Q |
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| T |
11164442 |
gtttgacgataataaggtggttaataataatggtggcagcagc |
11164484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 11156995 - 11157273
Alignment:
| Q |
22 |
ccaggttacaaacttcttcttctcttcttatatctattagggttttttcatatgctttattagggttcttaatattctttatatcactgaattattttca |
121 |
Q |
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| T |
11156995 |
ccaggttccaaacttcttcttctcttctcatatttattagggttttttcatatgctttattagggttcttaatactcttcatgtcactgaattattttca |
11157094 |
T |
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| Q |
122 |
tcttttcagcttcttattccctttttgcttcaaattaggttaatgggtatctatattctatctcatttctcactattttcgattannnnnnngctttgct |
221 |
Q |
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| T |
11157095 |
tcatttcaacttcttatgccttttttgcttcaaaataggttaatgggtatctatgttctctctcatttctcactattttcgatt----------ttgttt |
11157184 |
T |
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| Q |
222 |
ttgcttcacctagttcgaagatgaagaagatggtttcaaaaatggggattcctttggagcttttgatgaaaggtaaacataaatctaaatcc |
313 |
Q |
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| T |
11157185 |
ttgcttcacttagttccaa---gagcaagatattttcacaaacggggattcctttggagctcttgatgaaaggtaaacataaatctagatcc |
11157273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 389 - 548
Target Start/End: Original strand, 11157380 - 11157543
Alignment:
| Q |
389 |
gtttgaatgaatatttatttggttgataatgatggaaaca-atagcgtggcttcgatgatggaaactgaagttgttgatgttgataacaa---acctggg |
484 |
Q |
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| T |
11157380 |
gtttgaatgaatttttgtttgtttgataatgatgaaaaaatatagtgtggattcgatgatggaaactgatgttgttgatattgataacaacaaacctgcg |
11157479 |
T |
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| Q |
485 |
attgaaacttttgatatgatggtgtttgacgataataaggtggttaataataatggtggcagca |
548 |
Q |
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| T |
11157480 |
attgaaaattttgaaatgatggtgtttgatgataataaggtggttaataataatggtggcagca |
11157543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 35 - 313
Target Start/End: Original strand, 11176753 - 11177019
Alignment:
| Q |
35 |
ttcttcttctcttcttatatctattagggtttt---ttcatatgctttattagggttcttaatattctttatatcactgaattattttcatcttttcagc |
131 |
Q |
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| T |
11176753 |
ttcttattctcttctcagatctattagggtttttttttcatatcattcattagggttcttcatattcttcatatcactaaattattttcatttttttaac |
11176852 |
T |
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| Q |
132 |
ttcttattccctttttgcttcaaattaggttaatgggtatctatattctatctcatttctcactattttcgattannnnnnngctttgctttgcttcacc |
231 |
Q |
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| T |
11176853 |
ttcttattcccttttttcttcaaattatgttaatgggaatctgttttatctctcatttctcactattttttttttttt------tttgctatgcttcatc |
11176946 |
T |
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| Q |
232 |
tagttcgaagatgaagaagatggtttcaaaaatggggattcctttggagcttttgatgaaaggtaaacataaatctaaatcc |
313 |
Q |
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| T |
11176947 |
tagttc---------gaagatggtttaaaaaatggggattcctttgtagctcttggtgaaaggtaaacataaatctaaatcc |
11177019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 391 - 520
Target Start/End: Original strand, 11177124 - 11177263
Alignment:
| Q |
391 |
ttgaatgaatatttatttggttgataatgatggaaac--aatagcgtggcttcgatgatggaaactgaag---------ttgttgatgttgataacaaac |
479 |
Q |
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|||||||||| ||| |||||||||| |||||| ||| || || ||||||||||||||||||||||||| |||||||| ||||||| | || |
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| T |
11177124 |
ttgaatgaat-tttgtttggttgatgatgatgaaaaataaacagtgtggcttcgatgatggaaactgaagctgaaggtgttgttgatattgataatagac |
11177222 |
T |
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| Q |
480 |
ctgggattgaaacttttgatatgatggtgtttgacgataat |
520 |
Q |
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| T |
11177223 |
ctgcgatagaaaattttgatatgatggtgcttgatgataat |
11177263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 491
Target Start/End: Complemental strand, 4703830 - 4703773
Alignment:
| Q |
434 |
gtggcttcgatgatggaaactgaagttgttgatgttgataacaaacctgggattgaaa |
491 |
Q |
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| T |
4703830 |
gtggcttcgatgatggaaactgacattgttgatattgataataaaactgtgatagaaa |
4703773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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