View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4516_high_11 (Length: 283)

Name: NF4516_high_11
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4516_high_11
NF4516_high_11
[»] chr5 (7 HSPs)
chr5 (119-187)||(9291281-9291349)
chr5 (9-55)||(12558419-12558465)
chr5 (117-186)||(12557399-12557468)
chr5 (161-202)||(12558286-12558327)
chr5 (117-149)||(12558325-12558357)
chr5 (234-265)||(12558258-12558289)
chr5 (117-176)||(12560603-12560662)


Alignment Details
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 9291281 - 9291349
Alignment:
Q  119 gagacctttataattctataagcctattacataatgattgtcacaatacaatgtaatattaagtctctc 187  Q
    |||||||||||||||||||||||||||| ||||||||||||||   |||| ||||||||||||||||||    
T  9291281 gagacctttataattctataagcctattgcataatgattgtcatcgtacattgtaatattaagtctctc 9291349  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 12558465 - 12558419
Alignment:
Q  9 gacatcatcatctgcatacatacaacattaatatcaaatcaaatcgg 55  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||    
T  12558465 gacatcaacatctgcatacatacaacattaatatcaaatcaaatcgg 12558419  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 12557468 - 12557399
Alignment:
Q  117 tagagacctttataattctataagcctattacataatgattgtcacaatacaatgtaatattaagtctct 186  Q
    |||| |||||| ||||||||||||| |||| |||||||||||||| | |||| |||||||||| ||||||    
T  12557468 tagacacctttgtaattctataagcatattgcataatgattgtcatagtacattgtaatattacgtctct 12557399  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 12558327 - 12558286
Alignment:
Q  161 acaatacaatgtaatattaagtctctccctagccccttttgc 202  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  12558327 acaatacaatgtaatattaagtctctccctagtcccttttgc 12558286  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 12558357 - 12558325
Alignment:
Q  117 tagagacctttataattctataagcctattaca 149  Q
    |||||||||||||||||||||||||||||||||    
T  12558357 tagagacctttataattctataagcctattaca 12558325  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Complemental strand, 12558289 - 12558258
Alignment:
Q  234 ttgccaagtttcaaagaaccaaatactaaact 265  Q
    ||||||||||||||||||||||||||||||||    
T  12558289 ttgccaagtttcaaagaaccaaatactaaact 12558258  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 12560662 - 12560603
Alignment:
Q  117 tagagacctttataattctataagcctattacataatgattgtcacaatacaatgtaata 176  Q
    |||| ||||||||||||||| ||| ||||| |||||||||||||| | |||| |||||||    
T  12560662 tagatacctttataattctacaagactattgcataatgattgtcatagtacattgtaata 12560603  T

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