View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_high_3 (Length: 380)
Name: NF4516_high_3
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 27514164 - 27513835
Alignment:
| Q |
21 |
cttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtg |
120 |
Q |
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||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27514164 |
cttgccaccatccgatcttcttctctttgttctctgatttttcaaattctgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtg |
27514065 |
T |
|
| Q |
121 |
ggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaa |
220 |
Q |
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|||||||||||||||||||||||||||| |||||| | ||| ||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
27514064 |
ggaagaggaaccgcagaaaaaaccagaaaggagacgaagaccagaatgaaggaaccgctccgtcctccgatgagtaagaacaaagaaaaacgatctgaaa |
27513965 |
T |
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| Q |
221 |
ttcatgctaaactcttcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcac |
320 |
Q |
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|||||||||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| | |
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| T |
27513964 |
ttcatgctaaactcgtcagaagaagttttagaaacatgctaagtcgaaagctcacgatgctactattgaaagagctatcgagctcggtgaagaggtt--c |
27513867 |
T |
|
| Q |
321 |
tctctctcactggatggctgttgttgttttga |
352 |
Q |
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| T |
27513866 |
tctctctcactgaatggctgttgttgttttga |
27513835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 182 - 328
Target Start/End: Original strand, 8674890 - 8675040
Alignment:
| Q |
182 |
gtccttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcga |
277 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| || | ||||| |||||||| || ||||| || |
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| T |
8674890 |
gtccttcaatgattaagaacaaagaaaaacgatctgaaattcatgctaaactcaagcatcagaagaagcttgaaaaacgcgctaagtctaatgctcgtga |
8674989 |
T |
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| Q |
278 |
tgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
328 |
Q |
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|
||||| | || |||||||||||||||||||||||||||||||||||||||| |
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| T |
8674990 |
tgctgctgttaaaagagctatcgagctcggtgaagaggttcactctctctc |
8675040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 39209702 - 39209911
Alignment:
| Q |
21 |
cttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtg |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39209702 |
cttgccaccatccaatcttcttccctttcttctctgatttttcaaattccgtctgttcaaattgtgaaaccttcccaaaccttctaattggctttcggtg |
39209801 |
T |
|
| Q |
121 |
ggaagaggaaccgcagaaaaaaccagaacagagacggaaaccgaaatgaaggaactgctctgtccttcgatgagtaagaacaaagaaaaacgatctgaaa |
220 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39209802 |
ggaagaggaaccgcagaaaaaaccagaacagtgacggaaaccgaaatgaaggaactgctccgtccttcgatgagtaagaacaaagaaaaacgatctgaaa |
39209901 |
T |
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| Q |
221 |
ttcatgctaa |
230 |
Q |
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|||||||||| |
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| T |
39209902 |
ttcatgctaa |
39209911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 257 - 352
Target Start/End: Original strand, 39209906 - 39210001
Alignment:
| Q |
257 |
tgctaagtcgaaagctcgcgatgctgttattgaaagagctatcgagctcggtgaagaggttcactctctctcactggatggctgttgttgttttga |
352 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
39209906 |
tgctaagtcgaaagctcgcgatgctgctattgaaagagctatcgagctcggtgaagaggttcactctctctcactgaatggatgttgttgttttga |
39210001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 328
Target Start/End: Complemental strand, 24037194 - 24037047
Alignment:
| Q |
185 |
cttcgatgagtaagaacaaagaaaaacgatctgaaattcatgctaaactct----tcaaaagaagttttagaaacgtgctaagtcgaaagctcgcgatgc |
280 |
Q |
| |
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||||||||| |||||| |||| |||||||||||||||||||||||||||| ||| |||||| || |||||| |||||||||||||||||||||| |
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| T |
24037194 |
cttcgatgattaagaaaaaaggaaaacgatctgaaattcatgctaaactcaagcgtcagaagaagcttgagaaacacgctaagtcgaaagctcgcgatgt |
24037095 |
T |
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| Q |
281 |
tgttattgaaagagctatcgagctcggtgaagaggttcactctctctc |
328 |
Q |
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|| | || |||| ||||||||| ||||||||||||||| ||||||||| |
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| T |
24037094 |
tgctgttaaaagcgctatcgagatcggtgaagaggttcgctctctctc |
24037047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 24037323 - 24037276
Alignment:
| Q |
88 |
aaccttcccaaaccttctaattggctttcggtgggaagaggaaccgca |
135 |
Q |
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|||||||||||||||| | || ||||||||||||||||||||| |||| |
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| T |
24037323 |
aaccttcccaaaccttatgatcggctttcggtgggaagaggaagcgca |
24037276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 9460971 - 9461013
Alignment:
| Q |
88 |
aaccttcccaaaccttctaattggctttcggtgggaagaggaa |
130 |
Q |
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| T |
9460971 |
aaccttcccaaaccttctgattggctttcggtgggaacaggaa |
9461013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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