View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_high_5 (Length: 358)
Name: NF4516_high_5
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 33048839 - 33048481
Alignment:
| Q |
1 |
tactgattgtgatggcaccaatggcatggggatgccagcgtaggccaacctagaggattactgcataggtctaaacgccaatcaattttaaccaaacaaa |
100 |
Q |
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| T |
33048839 |
tactgattgtgatggcgccaatggcatggggatgccagcgtaggccaacctagaggattactgcataggtctaaatgccaatcaattttaaccaaacaaa |
33048740 |
T |
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| Q |
101 |
aataatcaactaaaccacgagccctaagtactagtctgagcagtctcagcgtaagaagatctcctggagagaggtttgttcaccaagcatgattttcagt |
200 |
Q |
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| T |
33048739 |
aataatcaactaaaccacgagccctaagtactagtctgagcagtctcagcgtaagaagatctcctggagagaggtttgttcaccaagcatgattttcagt |
33048640 |
T |
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| Q |
201 |
ttagttgctttgatgggaataaaaatccacttctttggagaagataagaa-gcattcccttaatccttgatcattaaatttgtaaatgtagtaaagtgat |
299 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048639 |
ttagttgctttgatgggaataaaaacccacttctttggagaagataagaattcattcccttaatccttgatcattaaatttgtaaatgtagtaaagtgat |
33048540 |
T |
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| Q |
300 |
gttatttatttactgacggtgctaattttcaacttgattggtatagaagcttagaaaac |
358 |
Q |
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| T |
33048539 |
gttatttatttaccgacggtgctaattttcaacttgattggtatagaagcttagaaaac |
33048481 |
T |
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