View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4516_high_7 (Length: 341)
Name: NF4516_high_7
Description: NF4516
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4516_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 341
Target Start/End: Original strand, 16347898 - 16348227
Alignment:
| Q |
12 |
tcatcaaccctccccaacttacaaagagcattcacaacagcagtataagtcaccaaattcggcctcaaccgcgtgaaattatcgaaaaaccacaaagaaa |
111 |
Q |
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| T |
16347898 |
tcatcaaccctccccaacttacaaagagcattcacaacagcagtataagtcaccaaattcggcctcgaccccatgaaattatcgaaaaaccacaaagaaa |
16347997 |
T |
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| Q |
112 |
gttctggttttccagctctacaaaacgccgaaacaacggaaatacaaacaaaatcatcaaaagggtaatcctttctatactcattcatcaattcaaaaac |
211 |
Q |
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| T |
16347998 |
gttctggttttccagctctactaaacgccgaaaccacagaactacaaacaaaatcatcaaaagggtaatcctttctatactcattcatcaattcaacaac |
16348097 |
T |
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| Q |
212 |
ctcaatagccttacccacatgacccacattgcaaaatctctgaatcacgcaacaaaaaacagtttttgagataaaaagacgattttttaccaagcaatgt |
311 |
Q |
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| T |
16348098 |
ctcaatagccttacccacatgacccacattgcaaaatctctgaatcacgcaacaaaaaacaatttttgagataaaaagacgattttttaccaagcaatgt |
16348197 |
T |
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| Q |
312 |
cgcagaacagagagaatcctttctgggttt |
341 |
Q |
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| T |
16348198 |
cgcagaacagagagaatcctttctgggttt |
16348227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 108 - 269
Target Start/End: Complemental strand, 47917086 - 47916925
Alignment:
| Q |
108 |
gaaagttctggttttccagctctacaaaacgccgaaacaacggaaatacaaacaaaatcatcaaaagggtaatcctttctatactcattcatcaattcaa |
207 |
Q |
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| T |
47917086 |
gaaagttcaggttttccaattctacaaaacgaggaaatcacagagctacaaacaaaatcatcaaaagggtaatcctttctatactcattcatcaattcaa |
47916987 |
T |
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| Q |
208 |
aaacctcaatagccttacccacatgacccacattgcaaaatctctgaatcacgcaacaaaaa |
269 |
Q |
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| T |
47916986 |
caacctcaatagccttacccacatgacccacattgcaaaatctatgaatcacgcaacaaaaa |
47916925 |
T |
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